RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 FER1L4A9Z1Z3 1794 aa7.51□□□□□ -1.21
CLIP1-217ENST00000543205 ZBTB7CA1YPR0 619 aa7.51□□□□□ -1.21
CLIP1-217ENST00000543205 CEBPAP49715 358 aaPredicted RBP7.51□□□□□ -1.21
CLIP1-217ENST00000543205 TRIM52Q96A61 297 aa7.51□□□□□ -1.21
CLIP1-217ENST00000543205 SLC24A3Q9HC58 644 aa7.51□□□□□ -1.21
CLIP1-217ENST00000543205 SETD5Q9C0A6 1442 aa7.51□□□□□ -1.21
CLIP1-217ENST00000543205 RNF17Q9BXT8 1623 aaKnown RBP7.51□□□□□ -1.21
CLIP1-217ENST00000543205 ZMYM3Q14202 1370 aa7.51□□□□□ -1.21
CLIP1-217ENST00000543205 KDM5DQ9BY66 1539 aa7.51□□□□□ -1.21
CLIP1-217ENST00000543205 RIMS1Q86UR5 1692 aaKnown RBP7.51□□□□□ -1.21
CLIP1-217ENST00000543205 RBM26Q5T8P6 1007 aaKnown RBP7.51□□□□□ -1.21
CLIP1-217ENST00000543205 CERKQ8TCT0 537 aa7.51□□□□□ -1.21
CLIP1-217ENST00000543205 NUP155O75694 1391 aa7.5□□□□□ -1.21
CLIP1-217ENST00000543205 FAM135AQ9P2D6 1515 aa7.5□□□□□ -1.21
CLIP1-217ENST00000543205 ARSIQ5FYB1 569 aa7.5□□□□□ -1.21
CLIP1-217ENST00000543205 PRDM15P57071 1507 aaPredicted RBP7.5□□□□□ -1.21
CLIP1-217ENST00000543205 GCC2Q8IWJ2 1684 aa7.5□□□□□ -1.21
CLIP1-217ENST00000543205 RGS20O76081 388 aa7.49□□□□□ -1.21
CLIP1-217ENST00000543205 NUDT7P0C024 238 aa7.49□□□□□ -1.21
CLIP1-217ENST00000543205 KHSRPQ92945 711 aaKnown RBP eCLIP7.49□□□□□ -1.21
CLIP1-217ENST00000543205 MROH1Q8NDA8 1641 aa7.49□□□□□ -1.21
CLIP1-217ENST00000543205 ACIN1Q9UKV3 1341 aaKnown RBP7.49□□□□□ -1.21
CLIP1-217ENST00000543205 ANO8Q9HCE9 1232 aaPredicted RBP7.49□□□□□ -1.21
CLIP1-217ENST00000543205 CLTCQ00610 1675 aaKnown RBP7.49□□□□□ -1.21
CLIP1-217ENST00000543205 ABCC3O15438 1527 aa7.49□□□□□ -1.21
CLIP1-217ENST00000543205 DEPDC5O75140 1603 aa7.48□□□□□ -1.21
CLIP1-217ENST00000543205 ANKRD13DQ6ZTN6 518 aa7.48□□□□□ -1.21
CLIP1-217ENST00000543205 GPIHBP1Q8IV16 184 aa7.48□□□□□ -1.21
CLIP1-217ENST00000543205 PDIA4P13667 645 aaKnown RBP7.47□□□□□ -1.21
CLIP1-217ENST00000543205 GPR153Q6NV75 609 aa7.47□□□□□ -1.21
CLIP1-217ENST00000543205 ZC3H15Q8WU90 426 aaKnown RBP7.47□□□□□ -1.21
CLIP1-217ENST00000543205 RAB3GAP2Q9H2M9 1393 aa7.47□□□□□ -1.21
CLIP1-217ENST00000543205 UNC13BO14795 1591 aa7.47□□□□□ -1.21
CLIP1-217ENST00000543205 ZC3H13Q5T200 1668 aaKnown RBP7.47□□□□□ -1.21
CLIP1-217ENST00000543205 FBXO31Q5XUX0 539 aaPredicted RBP7.47□□□□□ -1.21
CLIP1-217ENST00000543205 VWDEQ8N2E2 1590 aa7.47□□□□□ -1.21
CLIP1-217ENST00000543205 MROH2AA6NES4 1674 aa7.47□□□□□ -1.21
CLIP1-217ENST00000543205 LMTK2Q8IWU2 1503 aa7.46□□□□□ -1.21
CLIP1-217ENST00000543205 PZPP20742 1482 aa7.46□□□□□ -1.21
CLIP1-217ENST00000543205 OSBPP22059 807 aa7.46□□□□□ -1.22
CLIP1-217ENST00000543205 HSPA2P54652 639 aa7.46□□□□□ -1.22
CLIP1-217ENST00000543205 ARHGAP31Q2M1Z3 1444 aa7.46□□□□□ -1.22
CLIP1-217ENST00000543205 C3P01024 1663 aa7.46□□□□□ -1.22
CLIP1-217ENST00000543205 CEP152O94986 1710 aa7.46□□□□□ -1.22
CLIP1-217ENST00000543205 PHF14O94880 888 aa7.45□□□□□ -1.22
CLIP1-217ENST00000543205 LSM11P83369 360 aaKnown RBP eCLIP7.45□□□□□ -1.22
CLIP1-217ENST00000543205 NPATQ14207 1427 aa7.45□□□□□ -1.22
CLIP1-217ENST00000543205 CAMSAP1Q5T5Y3 1602 aa7.45□□□□□ -1.22
CLIP1-217ENST00000543205 IQGAP3Q86VI3 1631 aa7.44□□□□□ -1.22
CLIP1-217ENST00000543205 TNRQ92752 1358 aa7.44□□□□□ -1.22
CLIP1-217ENST00000543205 NUTM2FA1L443 756 aa7.44□□□□□ -1.22
CLIP1-217ENST00000543205 EPAS1Q99814 870 aa7.44□□□□□ -1.22
CLIP1-217ENST00000543205 PCGF6Q9BYE7 350 aa7.44□□□□□ -1.22
CLIP1-217ENST00000543205 EFCAB6Q5THR3 1501 aa7.44□□□□□ -1.22
CLIP1-217ENST00000543205 MPHOSPH9Q99550 1183 aa7.44□□□□□ -1.22
CLIP1-217ENST00000543205 TET3O43151 1660 aa7.43□□□□□ -1.22
CLIP1-217ENST00000543205 PBX2P40425 430 aa7.43□□□□□ -1.22
CLIP1-217ENST00000543205 ZNF454Q8N9F8 522 aa7.43□□□□□ -1.22
CLIP1-217ENST00000543205 RBM33Q96EV2 1170 aaKnown RBP7.43□□□□□ -1.22
CLIP1-217ENST00000543205 PCDHGA10Q9Y5H3 936 aa7.43□□□□□ -1.22
CLIP1-217ENST00000543205 ERVK-7P63135 1459 aa7.43□□□□□ -1.22
CLIP1-217ENST00000543205 RPRD2Q5VT52 1461 aaKnown RBP7.43□□□□□ -1.22
CLIP1-217ENST00000543205 UHRF1BP1Q6BDS2 1440 aa7.42□□□□□ -1.22
CLIP1-217ENST00000543205 PRIM1P49642 420 aaKnown RBP7.42□□□□□ -1.22
CLIP1-217ENST00000543205 TYW1BQ6NUM6 668 aa7.42□□□□□ -1.22
CLIP1-217ENST00000543205 APBB1O00213 710 aa7.42□□□□□ -1.22
CLIP1-217ENST00000543205 MAP3K7O43318 606 aa7.42□□□□□ -1.22
CLIP1-217ENST00000543205 FOSBP53539 338 aa7.42□□□□□ -1.22
CLIP1-217ENST00000543205 EN1Q05925 392 aaPredicted RBP7.42□□□□□ -1.22
CLIP1-217ENST00000543205 LHX6Q9UPM6 363 aa7.42□□□□□ -1.22
CLIP1-217ENST00000543205 SPATA31D1Q6ZQQ2 1576 aa7.42□□□□□ -1.22
CLIP1-217ENST00000543205 SLC52A1Q9NWF4 448 aa7.41□□□□□ -1.22
CLIP1-217ENST00000543205 NOS1P29475 1434 aa7.41□□□□□ -1.22
CLIP1-217ENST00000543205 E9PCH4 1651 aa7.4□□□□□ -1.22
CLIP1-217ENST00000543205 FBXW7Q969H0 707 aa7.4□□□□□ -1.22
CLIP1-217ENST00000543205 NLRP1Q9C000 1473 aa7.4□□□□□ -1.22
CLIP1-217ENST00000543205 SETD1BQ9UPS6 1966 aaKnown RBP7.4□□□□□ -1.22
CLIP1-217ENST00000543205 PREX1Q8TCU6 1659 aa7.4□□□□□ -1.22
CLIP1-217ENST00000543205 IDI1Q13907 227 aa7.4□□□□□ -1.23
CLIP1-217ENST00000543205 CFAP65Q6ZU64 1925 aaKnown RBP7.4□□□□□ -1.23
CLIP1-217ENST00000543205 ZMYND10O75800 440 aa7.39□□□□□ -1.23
CLIP1-217ENST00000543205 ZDHHC16Q969W1 377 aa7.39□□□□□ -1.23
CLIP1-217ENST00000543205 A2ML1A8K2U0 1454 aa7.39□□□□□ -1.23
CLIP1-217ENST00000543205 GPR37O15354 613 aa7.39□□□□□ -1.23
CLIP1-217ENST00000543205 PPP4R3BQ5MIZ7 849 aa7.39□□□□□ -1.23
CLIP1-217ENST00000543205 THEMISQ8N1K5 641 aaPredicted RBP7.39□□□□□ -1.23
CLIP1-217ENST00000543205 KCTD17Q8N5Z5 321 aa7.39□□□□□ -1.23
CLIP1-217ENST00000543205 IRX2Q9BZI1 471 aaPredicted RBP7.39□□□□□ -1.23
CLIP1-217ENST00000543205 CDHR5Q9HBB8 845 aa7.39□□□□□ -1.23
CLIP1-217ENST00000543205 PTPRTO14522 1441 aa7.39□□□□□ -1.23
CLIP1-217ENST00000543205 MYO3AQ8NEV4 1616 aa7.39□□□□□ -1.23
CLIP1-217ENST00000543205 PSDA5PKW4 1024 aaPredicted RBP7.38□□□□□ -1.23
CLIP1-217ENST00000543205 FCHSD2O94868 740 aa7.38□□□□□ -1.23
CLIP1-217ENST00000543205 SYNMO15061 1565 aa7.38□□□□□ -1.23
CLIP1-217ENST00000543205 CEP170BQ9Y4F5 1589 aaPredicted RBP7.38□□□□□ -1.23
CLIP1-217ENST00000543205 TSR1Q2NL82 804 aaKnown RBP7.37□□□□□ -1.23
CLIP1-217ENST00000543205 BARGINQ6ZT62 677 aa7.37□□□□□ -1.23
CLIP1-217ENST00000543205 GPBP1L1Q9HC44 474 aaPredicted RBP7.37□□□□□ -1.23
CLIP1-217ENST00000543205 UGGT1Q9NYU2 1555 aa7.37□□□□□ -1.23
CLIP1-217ENST00000543205 KRI1Q8N9T8 703 aaKnown RBP7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms