RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 KIF1AQ12756 1690 aa17.42■□□□□ 0.38
VPS33A-207ENST00000542790 SPATA31A3Q5VYP0 1347 aa17.42■□□□□ 0.38
VPS33A-207ENST00000542790 QRICH2Q9H0J4 1663 aa17.42■□□□□ 0.38
VPS33A-207ENST00000542790 PNPLA6Q8IY17 1366 aa17.41■□□□□ 0.38
VPS33A-207ENST00000542790 PUS7Q96PZ0 661 aaKnown RBP17.41■□□□□ 0.38
VPS33A-207ENST00000542790 CABP1Q9NZU7 370 aa17.41■□□□□ 0.38
VPS33A-207ENST00000542790 ACEP12821 1306 aa17.41■□□□□ 0.38
VPS33A-207ENST00000542790 SBNO1A3KN83 1393 aa17.4■□□□□ 0.38
VPS33A-207ENST00000542790 ATAD2Q6PL18 1390 aa17.4■□□□□ 0.38
VPS33A-207ENST00000542790 PPIP5K1Q6PFW1 1433 aa17.4■□□□□ 0.38
VPS33A-207ENST00000542790 POLR3AO14802 1390 aaPredicted RBP17.4■□□□□ 0.38
VPS33A-207ENST00000542790 NUTM2BA6NNL0 878 aaPredicted RBP17.39■□□□□ 0.37
VPS33A-207ENST00000542790 NUTM2EB1AL46 878 aaPredicted RBP17.39■□□□□ 0.37
VPS33A-207ENST00000542790 TMF1P82094 1093 aa17.39■□□□□ 0.37
VPS33A-207ENST00000542790 NUTM2AQ8IVF1 878 aaPredicted RBP17.39■□□□□ 0.37
VPS33A-207ENST00000542790 DISP3Q9P2K9 1392 aa17.39■□□□□ 0.37
VPS33A-207ENST00000542790 EIF4G2P78344 907 aaKnown RBP eCLIP17.38■□□□□ 0.37
VPS33A-207ENST00000542790 LMOD2Q6P5Q4 547 aa17.38■□□□□ 0.37
VPS33A-207ENST00000542790 PAK3O75914 559 aaPredicted RBP17.37■□□□□ 0.37
VPS33A-207ENST00000542790 MEX3CQ5U5Q3 659 aaKnown RBP17.37■□□□□ 0.37
VPS33A-207ENST00000542790 ARHGEF10O15013 1369 aa17.37■□□□□ 0.37
VPS33A-207ENST00000542790 CDCA8Q53HL2 280 aa17.36■□□□□ 0.37
VPS33A-207ENST00000542790 REM2Q8IYK8 340 aaPredicted RBP17.36■□□□□ 0.37
VPS33A-207ENST00000542790 ZNF692Q9BU19 519 aaPredicted RBP17.36■□□□□ 0.37
VPS33A-207ENST00000542790 TNS3Q68CZ2 1445 aa17.36■□□□□ 0.37
VPS33A-207ENST00000542790 MED1Q15648 1581 aaPredicted RBP17.36■□□□□ 0.37
VPS33A-207ENST00000542790 SHPRHQ149N8 1683 aa17.34■□□□□ 0.37
VPS33A-207ENST00000542790 TMC1Q8TDI8 760 aa17.34■□□□□ 0.37
VPS33A-207ENST00000542790 SSUH2Q9Y2M2 353 aa17.34■□□□□ 0.37
VPS33A-207ENST00000542790 RGPD8O14715 1765 aaPredicted RBP17.33■□□□□ 0.37
VPS33A-207ENST00000542790 BRD4O60885 1362 aaPredicted RBP17.33■□□□□ 0.36
VPS33A-207ENST00000542790 ADAMTS2O95450 1211 aa17.32■□□□□ 0.36
VPS33A-207ENST00000542790 HSPA5P11021 654 aaKnown RBP17.32■□□□□ 0.36
VPS33A-207ENST00000542790 ITSN1Q15811 1721 aa17.32■□□□□ 0.36
VPS33A-207ENST00000542790 LRP6O75581 1613 aa17.32■□□□□ 0.36
VPS33A-207ENST00000542790 HAP1P54257 671 aaPredicted RBP17.31■□□□□ 0.36
VPS33A-207ENST00000542790 SLC12A5Q9H2X9 1139 aa17.31■□□□□ 0.36
VPS33A-207ENST00000542790 TOPAZ1Q8N9V7 1692 aa17.3■□□□□ 0.36
VPS33A-207ENST00000542790 HDGFL2Q7Z4V5 671 aaPredicted RBP17.3■□□□□ 0.36
VPS33A-207ENST00000542790 ABTB2Q8N961 1025 aa17.3■□□□□ 0.36
VPS33A-207ENST00000542790 TERF2IPQ9NYB0 399 aa17.3■□□□□ 0.36
VPS33A-207ENST00000542790 NINLQ9Y2I6 1382 aa17.29■□□□□ 0.36
VPS33A-207ENST00000542790 CABLES1Q8TDN4 633 aa17.29■□□□□ 0.36
VPS33A-207ENST00000542790 C8orf37Q96NL8 207 aa17.29■□□□□ 0.36
VPS33A-207ENST00000542790 USP6P35125 1406 aa17.29■□□□□ 0.36
VPS33A-207ENST00000542790 PLEKHG5O94827 1062 aa17.28■□□□□ 0.36
VPS33A-207ENST00000542790 NGLY1Q96IV0 654 aa17.28■□□□□ 0.36
VPS33A-207ENST00000542790 CPSF1Q10570 1443 aaKnown RBP17.28■□□□□ 0.36
VPS33A-207ENST00000542790 KTN1Q86UP2 1357 aaKnown RBP17.28■□□□□ 0.36
VPS33A-207ENST00000542790 ZNF772Q68DY9 489 aaPredicted RBP17.27■□□□□ 0.36
VPS33A-207ENST00000542790 RGS17Q9UGC6 210 aaPredicted RBP17.27■□□□□ 0.36
VPS33A-207ENST00000542790 COL22A1Q8NFW1 1626 aaPredicted RBP17.27■□□□□ 0.36
VPS33A-207ENST00000542790 NLRP13Q86W25 1043 aa17.26■□□□□ 0.35
VPS33A-207ENST00000542790 TTC21BQ7Z4L5 1316 aa17.25■□□□□ 0.35
VPS33A-207ENST00000542790 SSH2Q76I76 1423 aa17.25■□□□□ 0.35
VPS33A-207ENST00000542790 NUTM2GQ5VZR2 741 aa17.25■□□□□ 0.35
VPS33A-207ENST00000542790 TTC21AQ8NDW8 1320 aa17.24■□□□□ 0.35
VPS33A-207ENST00000542790 NLRP6P59044 892 aa17.24■□□□□ 0.35
VPS33A-207ENST00000542790 TRPM3Q9HCF6 1732 aaPredicted RBP17.24■□□□□ 0.35
VPS33A-207ENST00000542790 AFF2P51816 1311 aa17.23■□□□□ 0.35
VPS33A-207ENST00000542790 FNBP4Q8N3X1 1017 aaPredicted RBP17.23■□□□□ 0.35
VPS33A-207ENST00000542790 A0A1W2PP64 1363 aa17.22■□□□□ 0.35
VPS33A-207ENST00000542790 CD163L1Q9NR16 1453 aa17.22■□□□□ 0.35
VPS33A-207ENST00000542790 CHRDL2Q6WN34 429 aa17.21■□□□□ 0.35
VPS33A-207ENST00000542790 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.21■□□□□ 0.35
VPS33A-207ENST00000542790 POLR3GLQ9BT43 218 aa17.21■□□□□ 0.35
VPS33A-207ENST00000542790 USP21Q9UK80 565 aa17.21■□□□□ 0.35
VPS33A-207ENST00000542790 ALS2Q96Q42 1657 aa17.2■□□□□ 0.34
VPS33A-207ENST00000542790 ANKRD36BQ8N2N9 1353 aa17.2■□□□□ 0.34
VPS33A-207ENST00000542790 POTEAQ6S8J7 498 aa17.2■□□□□ 0.34
VPS33A-207ENST00000542790 USP19O94966 1318 aa17.2■□□□□ 0.34
VPS33A-207ENST00000542790 FAM83GA6ND36 823 aa17.19■□□□□ 0.34
VPS33A-207ENST00000542790 GCP02774 474 aa17.19■□□□□ 0.34
VPS33A-207ENST00000542790 EDC4Q6P2E9 1401 aaKnown RBP17.19■□□□□ 0.34
VPS33A-207ENST00000542790 PITPNM1O00562 1244 aa17.18■□□□□ 0.34
VPS33A-207ENST00000542790 QTRT2Q9H974 415 aaKnown RBP17.18■□□□□ 0.34
VPS33A-207ENST00000542790 PRDM11Q9NQV5 511 aa17.18■□□□□ 0.34
VPS33A-207ENST00000542790 KCNH5Q8NCM2 988 aa17.17■□□□□ 0.34
VPS33A-207ENST00000542790 C11orf95C9JLR9 678 aaPredicted RBP17.16■□□□□ 0.34
VPS33A-207ENST00000542790 ZC3H6P61129 1189 aaKnown RBP17.16■□□□□ 0.34
VPS33A-207ENST00000542790 NME9Q86XW9 330 aa17.16■□□□□ 0.34
VPS33A-207ENST00000542790 TRPC5Q9UL62 973 aaPredicted RBP17.16■□□□□ 0.34
VPS33A-207ENST00000542790 USP31Q70CQ4 1352 aa17.15■□□□□ 0.34
VPS33A-207ENST00000542790 ZEB1P37275 1124 aaPredicted RBP17.15■□□□□ 0.34
VPS33A-207ENST00000542790 ILDR2Q71H61 639 aa17.15■□□□□ 0.34
VPS33A-207ENST00000542790 UNC5CLQ8IV45 518 aa17.15■□□□□ 0.34
VPS33A-207ENST00000542790 KIAA0232Q92628 1395 aa17.15■□□□□ 0.34
VPS33A-207ENST00000542790 BCL9LQ86UU0 1499 aa17.14■□□□□ 0.33
VPS33A-207ENST00000542790 RXRBP28702 533 aa17.14■□□□□ 0.33
VPS33A-207ENST00000542790 CPDO75976 1380 aa17.14■□□□□ 0.33
VPS33A-207ENST00000542790 SLIT2O94813 1529 aa17.13■□□□□ 0.33
VPS33A-207ENST00000542790 SPDYE4A6NLX3 237 aa17.13■□□□□ 0.33
VPS33A-207ENST00000542790 BTG4Q9NY30 223 aa17.13■□□□□ 0.33
VPS33A-207ENST00000542790 ZRANB1Q9UGI0 708 aa17.13■□□□□ 0.33
VPS33A-207ENST00000542790 RBM6P78332 1123 aaKnown RBP17.12■□□□□ 0.33
VPS33A-207ENST00000542790 CARD14Q9BXL6 1004 aa17.12■□□□□ 0.33
VPS33A-207ENST00000542790 KIF7Q2M1P5 1343 aa17.12■□□□□ 0.33
VPS33A-207ENST00000542790 AKAP12Q02952 1782 aa17.12■□□□□ 0.33
VPS33A-207ENST00000542790 CHRNA2Q15822 529 aa17.11■□□□□ 0.33
VPS33A-207ENST00000542790 COG3Q96JB2 828 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms