RNA–Protein interactions for RNA: ENST00000541764.5

LMO3-227, Transcript of LIM domain only 3, humanhuman

TSL 1 (best)

Gene LMO3, Length 1,489 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-227ENST00000541764 SETD1AO15047 1707 aaKnown RBP12.8□□□□□ -0.36
LMO3-227ENST00000541764 FAM69CQ0P6D2 419 aa12.8□□□□□ -0.36
LMO3-227ENST00000541764 FAM161AQ3B820 660 aa12.8□□□□□ -0.36
LMO3-227ENST00000541764 SIRT1Q96EB6 747 aa12.8□□□□□ -0.36
LMO3-227ENST00000541764 PRAM1Q96QH2 718 aa12.8□□□□□ -0.36
LMO3-227ENST00000541764 PLEKHF1Q96S99 279 aa12.8□□□□□ -0.36
LMO3-227ENST00000541764 FYB1O15117 783 aa12.79□□□□□ -0.36
LMO3-227ENST00000541764 SRPK2P78362 688 aaKnown RBP12.79□□□□□ -0.36
LMO3-227ENST00000541764 NUTM2DQ5VT03 806 aaPredicted RBP12.79□□□□□ -0.36
LMO3-227ENST00000541764 CYB5RLQ6IPT4 315 aa12.79□□□□□ -0.36
LMO3-227ENST00000541764 REM2Q8IYK8 340 aaPredicted RBP12.79□□□□□ -0.36
LMO3-227ENST00000541764 PNNQ9H307 717 aaKnown RBP12.79□□□□□ -0.36
LMO3-227ENST00000541764 ZBTB22O15209 634 aa12.78□□□□□ -0.36
LMO3-227ENST00000541764 FBXO31Q5XUX0 539 aaPredicted RBP12.78□□□□□ -0.36
LMO3-227ENST00000541764 HDGFL2Q7Z4V5 671 aaPredicted RBP12.78□□□□□ -0.36
LMO3-227ENST00000541764 CLUAP1Q96AJ1 413 aa12.78□□□□□ -0.36
LMO3-227ENST00000541764 POGKQ9P215 609 aa12.78□□□□□ -0.36
LMO3-227ENST00000541764 RIMS2Q9UQ26 1411 aa12.78□□□□□ -0.36
LMO3-227ENST00000541764 TNNT2P45379 298 aaPredicted RBP12.78□□□□□ -0.36
LMO3-227ENST00000541764 C8orf34Q49A92 452 aa12.78□□□□□ -0.36
LMO3-227ENST00000541764 MAPK8IP3Q9UPT6 1336 aa12.77□□□□□ -0.37
LMO3-227ENST00000541764 U2AF1L5P0DN76 240 aaPredicted RBP12.77□□□□□ -0.37
LMO3-227ENST00000541764 U2AF1Q01081 240 aaKnown RBP eCLIP12.77□□□□□ -0.37
LMO3-227ENST00000541764 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.77□□□□□ -0.37
LMO3-227ENST00000541764 CDK19Q9BWU1 502 aa12.77□□□□□ -0.37
LMO3-227ENST00000541764 TECPR2O15040 1411 aa12.76□□□□□ -0.37
LMO3-227ENST00000541764 PMFBP1Q8TBY8 1022 aa12.76□□□□□ -0.37
LMO3-227ENST00000541764 STK26Q9P289 416 aa12.76□□□□□ -0.37
LMO3-227ENST00000541764 KIF20BQ96Q89 1820 aa12.75□□□□□ -0.37
LMO3-227ENST00000541764 FAM135BQ49AJ0 1406 aa12.75□□□□□ -0.37
LMO3-227ENST00000541764 MINK1Q8N4C8 1332 aaPredicted RBP12.75□□□□□ -0.37
LMO3-227ENST00000541764 TMPOP42166 694 aaKnown RBP12.75□□□□□ -0.37
LMO3-227ENST00000541764 USP35Q9P2H5 1018 aa12.75□□□□□ -0.37
LMO3-227ENST00000541764 FXR2P51116 673 aaKnown RBP eCLIP12.74□□□□□ -0.37
LMO3-227ENST00000541764 GGNBP2Q9H3C7 697 aa12.74□□□□□ -0.37
LMO3-227ENST00000541764 RRP7AQ9Y3A4 280 aaKnown RBP12.74□□□□□ -0.37
LMO3-227ENST00000541764 KNDC1Q76NI1 1749 aa12.74□□□□□ -0.37
LMO3-227ENST00000541764 CPSF1Q10570 1443 aaKnown RBP12.74□□□□□ -0.37
LMO3-227ENST00000541764 NRXN3Q9Y4C0 1643 aa12.74□□□□□ -0.37
LMO3-227ENST00000541764 IGHDP01880 384 aa12.73□□□□□ -0.37
LMO3-227ENST00000541764 STAG3Q9UJ98 1225 aa12.73□□□□□ -0.37
LMO3-227ENST00000541764 TRIM35Q9UPQ4 493 aa12.73□□□□□ -0.37
LMO3-227ENST00000541764 PPM1GO15355 546 aaPredicted RBP12.72□□□□□ -0.37
LMO3-227ENST00000541764 DIAPH1O60610 1272 aaKnown RBP12.72□□□□□ -0.37
LMO3-227ENST00000541764 FCHSD2O94868 740 aa12.72□□□□□ -0.37
LMO3-227ENST00000541764 CANXP27824 592 aaKnown RBP12.72□□□□□ -0.37
LMO3-227ENST00000541764 SAFB2Q14151 953 aaKnown RBP eCLIP12.72□□□□□ -0.37
LMO3-227ENST00000541764 PANK1Q8TE04 598 aa12.72□□□□□ -0.37
LMO3-227ENST00000541764 EDC4Q6P2E9 1401 aaKnown RBP12.72□□□□□ -0.37
LMO3-227ENST00000541764 AATKQ6ZMQ8 1374 aa12.72□□□□□ -0.37
LMO3-227ENST00000541764 HDGFP51858 240 aaKnown RBP12.72□□□□□ -0.37
LMO3-227ENST00000541764 NEUROD2Q15784 382 aa12.72□□□□□ -0.37
LMO3-227ENST00000541764 ZNF428Q96B54 188 aa12.72□□□□□ -0.37
LMO3-227ENST00000541764 CABP1Q9NZU7 370 aa12.72□□□□□ -0.37
LMO3-227ENST00000541764 COG6Q9Y2V7 657 aa12.72□□□□□ -0.37
LMO3-227ENST00000541764 PPIP5K1Q6PFW1 1433 aa12.72□□□□□ -0.37
LMO3-227ENST00000541764 BRPF1P55201 1214 aaPredicted RBP12.71□□□□□ -0.38
LMO3-227ENST00000541764 ZKSCAN2Q63HK3 967 aa12.71□□□□□ -0.38
LMO3-227ENST00000541764 NPM2Q86SE8 214 aaKnown RBP12.71□□□□□ -0.38
LMO3-227ENST00000541764 SKAP1Q86WV1 359 aa12.71□□□□□ -0.38
LMO3-227ENST00000541764 FOXD4L1Q9NU39 408 aa12.71□□□□□ -0.38
LMO3-227ENST00000541764 VIRMAQ69YN4 1812 aaKnown RBP12.71□□□□□ -0.38
LMO3-227ENST00000541764 CPS1P31327 1500 aa12.71□□□□□ -0.38
LMO3-227ENST00000541764 MVPQ14764 893 aaKnown RBP12.7□□□□□ -0.38
LMO3-227ENST00000541764 WASLO00401 505 aaPredicted RBP12.69□□□□□ -0.38
LMO3-227ENST00000541764 RLBP1P12271 317 aa12.69□□□□□ -0.38
LMO3-227ENST00000541764 RWDD1Q9H446 243 aaPredicted RBP12.69□□□□□ -0.38
LMO3-227ENST00000541764 ALDH1L2Q3SY69 923 aa12.68□□□□□ -0.38
LMO3-227ENST00000541764 FRAT1Q92837 279 aaPredicted RBP12.68□□□□□ -0.38
LMO3-227ENST00000541764 CDK12Q9NYV4 1490 aaPredicted RBP12.68□□□□□ -0.38
LMO3-227ENST00000541764 TSPOAP1O95153 1857 aa12.68□□□□□ -0.38
LMO3-227ENST00000541764 U2SURPO15042 1029 aaKnown RBP12.67□□□□□ -0.38
LMO3-227ENST00000541764 DZIP1LQ8IYY4 767 aaKnown RBP12.67□□□□□ -0.38
LMO3-227ENST00000541764 RSPH6AQ9H0K4 717 aa12.67□□□□□ -0.38
LMO3-227ENST00000541764 POLKQ9UBT6 870 aa12.67□□□□□ -0.38
LMO3-227ENST00000541764 PCDHB15Q9Y5E8 787 aa12.67□□□□□ -0.38
LMO3-227ENST00000541764 RGS3P49796 1198 aa12.66□□□□□ -0.38
LMO3-227ENST00000541764 RTL5Q5HYW3 569 aaPredicted RBP12.66□□□□□ -0.38
LMO3-227ENST00000541764 ZBTB12Q9Y330 459 aaPredicted RBP12.66□□□□□ -0.38
LMO3-227ENST00000541764 LRRC7Q96NW7 1537 aa12.66□□□□□ -0.38
LMO3-227ENST00000541764 MON2Q7Z3U7 1717 aa12.66□□□□□ -0.38
LMO3-227ENST00000541764 METP08581 1390 aa12.66□□□□□ -0.38
LMO3-227ENST00000541764 PITPNM1O00562 1244 aa12.65□□□□□ -0.38
LMO3-227ENST00000541764 RIPK4P57078 832 aa12.65□□□□□ -0.38
LMO3-227ENST00000541764 CALD1Q05682 793 aaKnown RBP12.65□□□□□ -0.38
LMO3-227ENST00000541764 EXOSC9Q06265 439 aaKnown RBP12.65□□□□□ -0.38
LMO3-227ENST00000541764 HDAC1Q13547 482 aaPredicted RBP12.65□□□□□ -0.38
LMO3-227ENST00000541764 WAPLQ7Z5K2 1190 aa12.65□□□□□ -0.38
LMO3-227ENST00000541764 KIF13AQ9H1H9 1805 aa12.65□□□□□ -0.38
LMO3-227ENST00000541764 KIF16BQ96L93 1317 aa12.65□□□□□ -0.38
LMO3-227ENST00000541764 TNRQ92752 1358 aa12.65□□□□□ -0.38
LMO3-227ENST00000541764 DEKP35659 375 aaKnown RBP12.65□□□□□ -0.38
LMO3-227ENST00000541764 EVX2Q03828 476 aa12.65□□□□□ -0.38
LMO3-227ENST00000541764 ATF7IPQ6VMQ6 1270 aa12.65□□□□□ -0.38
LMO3-227ENST00000541764 ZNF692Q9BU19 519 aaPredicted RBP12.65□□□□□ -0.38
LMO3-227ENST00000541764 DDX19BQ9UMR2 479 aa12.65□□□□□ -0.38
LMO3-227ENST00000541764 USP19O94966 1318 aa12.64□□□□□ -0.39
LMO3-227ENST00000541764 TMEM2Q9UHN6 1383 aa12.64□□□□□ -0.39
LMO3-227ENST00000541764 IPO8O15397 1037 aaKnown RBP12.64□□□□□ -0.39
LMO3-227ENST00000541764 NBR1Q14596 966 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms