RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 ANKRD36BQ8N2N9 1353 aa24.19■■□□□ 1.46
CLSTN3-210ENST00000540931 SLC12A5Q9H2X9 1139 aa24.19■■□□□ 1.46
CLSTN3-210ENST00000540931 PXDNQ92626 1479 aa24.19■■□□□ 1.46
CLSTN3-210ENST00000540931 CDK12Q9NYV4 1490 aaPredicted RBP24.19■■□□□ 1.46
CLSTN3-210ENST00000540931 KTN1Q86UP2 1357 aaKnown RBP24.18■■□□□ 1.46
CLSTN3-210ENST00000540931 TTC21AQ8NDW8 1320 aa24.17■■□□□ 1.46
CLSTN3-210ENST00000540931 USP6P35125 1406 aa24.17■■□□□ 1.46
CLSTN3-210ENST00000540931 AFF2P51816 1311 aa24.16■■□□□ 1.46
CLSTN3-210ENST00000540931 KIF7Q2M1P5 1343 aa24.16■■□□□ 1.46
CLSTN3-210ENST00000540931 POLR3GLQ9BT43 218 aa24.16■■□□□ 1.46
CLSTN3-210ENST00000540931 SPATA31A3Q5VYP0 1347 aa24.15■■□□□ 1.46
CLSTN3-210ENST00000540931 TNS3Q68CZ2 1445 aa24.15■■□□□ 1.46
CLSTN3-210ENST00000540931 CCDC7Q96M83 1385 aa24.15■■□□□ 1.46
CLSTN3-210ENST00000540931 EDC4Q6P2E9 1401 aaKnown RBP24.14■■□□□ 1.45
CLSTN3-210ENST00000540931 PAK3O75914 559 aaPredicted RBP24.13■■□□□ 1.45
CLSTN3-210ENST00000540931 AKAP12Q02952 1782 aa24.13■■□□□ 1.45
CLSTN3-210ENST00000540931 DDX17Q92841 729 aaKnown RBP24.11■■□□□ 1.45
CLSTN3-210ENST00000540931 A0A1W2PP64 1363 aa24.11■■□□□ 1.45
CLSTN3-210ENST00000540931 C11orf95C9JLR9 678 aaPredicted RBP24.1■■□□□ 1.45
CLSTN3-210ENST00000540931 CD163L1Q9NR16 1453 aa24.09■■□□□ 1.45
CLSTN3-210ENST00000540931 XPCQ01831 940 aaPredicted RBP24.09■■□□□ 1.45
CLSTN3-210ENST00000540931 NLRP13Q86W25 1043 aa24.09■■□□□ 1.45
CLSTN3-210ENST00000540931 MON2Q7Z3U7 1717 aa24.09■■□□□ 1.45
CLSTN3-210ENST00000540931 WASHC2AQ641Q2 1341 aa24.09■■□□□ 1.45
CLSTN3-210ENST00000540931 TTC21BQ7Z4L5 1316 aa24.09■■□□□ 1.45
CLSTN3-210ENST00000540931 PNPLA6Q8IY17 1366 aa24.08■■□□□ 1.45
CLSTN3-210ENST00000540931 ABTB2Q8N961 1025 aa24.08■■□□□ 1.45
CLSTN3-210ENST00000540931 SSH2Q76I76 1423 aa24.08■■□□□ 1.44
CLSTN3-210ENST00000540931 TRPM3Q9HCF6 1732 aaPredicted RBP24.07■■□□□ 1.44
CLSTN3-210ENST00000540931 LMOD2Q6P5Q4 547 aa24.07■■□□□ 1.44
CLSTN3-210ENST00000540931 C8orf37Q96NL8 207 aa24.07■■□□□ 1.44
CLSTN3-210ENST00000540931 QTRT2Q9H974 415 aaKnown RBP24.07■■□□□ 1.44
CLSTN3-210ENST00000540931 MYOM1P52179 1685 aa24.07■■□□□ 1.44
CLSTN3-210ENST00000540931 RBM6P78332 1123 aaKnown RBP24.06■■□□□ 1.44
CLSTN3-210ENST00000540931 CGNL1Q0VF96 1302 aa24.05■■□□□ 1.44
CLSTN3-210ENST00000540931 RGS12O14924 1447 aa24.04■■□□□ 1.44
CLSTN3-210ENST00000540931 PANK3Q9H999 370 aa24.04■■□□□ 1.44
CLSTN3-210ENST00000540931 KNSTRNQ9Y448 316 aa24.04■■□□□ 1.44
CLSTN3-210ENST00000540931 COL22A1Q8NFW1 1626 aaPredicted RBP24.03■■□□□ 1.44
CLSTN3-210ENST00000540931 ALS2Q96Q42 1657 aa24.03■■□□□ 1.44
CLSTN3-210ENST00000540931 ZNF316A6NFI3 1004 aaPredicted RBP24.03■■□□□ 1.44
CLSTN3-210ENST00000540931 USP31Q70CQ4 1352 aa24.02■■□□□ 1.44
CLSTN3-210ENST00000540931 NRKQ7Z2Y5 1582 aa24.01■■□□□ 1.43
CLSTN3-210ENST00000540931 HAP1P54257 671 aaPredicted RBP24.01■■□□□ 1.43
CLSTN3-210ENST00000540931 NLRP6P59044 892 aa24.01■■□□□ 1.43
CLSTN3-210ENST00000540931 KCNH5Q8NCM2 988 aa24.01■■□□□ 1.43
CLSTN3-210ENST00000540931 NSD2O96028 1365 aa24.01■■□□□ 1.43
CLSTN3-210ENST00000540931 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.99■■□□□ 1.43
CLSTN3-210ENST00000540931 NGLY1Q96IV0 654 aa23.99■■□□□ 1.43
CLSTN3-210ENST00000540931 ADAMTS2O95450 1211 aa23.98■■□□□ 1.43
CLSTN3-210ENST00000540931 COG3Q96JB2 828 aa23.98■■□□□ 1.43
CLSTN3-210ENST00000540931 NSD3Q9BZ95 1437 aa23.98■■□□□ 1.43
CLSTN3-210ENST00000540931 USP19O94966 1318 aa23.96■■□□□ 1.43
CLSTN3-210ENST00000540931 CARD14Q9BXL6 1004 aa23.96■■□□□ 1.43
CLSTN3-210ENST00000540931 NPC1L1Q9UHC9 1359 aa23.93■■□□□ 1.42
CLSTN3-210ENST00000540931 USP54Q70EL1 1684 aa23.93■■□□□ 1.42
CLSTN3-210ENST00000540931 FYB1O15117 783 aa23.93■■□□□ 1.42
CLSTN3-210ENST00000540931 PIK3C2AO00443 1686 aa23.92■■□□□ 1.42
CLSTN3-210ENST00000540931 GCP02774 474 aa23.91■■□□□ 1.42
CLSTN3-210ENST00000540931 NME9Q86XW9 330 aa23.91■■□□□ 1.42
CLSTN3-210ENST00000540931 FNBP4Q8N3X1 1017 aaPredicted RBP23.91■■□□□ 1.42
CLSTN3-210ENST00000540931 USP21Q9UK80 565 aa23.91■■□□□ 1.42
CLSTN3-210ENST00000540931 PER1O15534 1290 aaPredicted RBP23.9■■□□□ 1.42
CLSTN3-210ENST00000540931 TRPC5Q9UL62 973 aaPredicted RBP23.89■■□□□ 1.41
CLSTN3-210ENST00000540931 OVOS2A0A0J9YW53 1432 aa23.89■■□□□ 1.41
CLSTN3-210ENST00000540931 OVOS2Q6IE36 1432 aa23.89■■□□□ 1.41
CLSTN3-210ENST00000540931 SLIT3O75094 1523 aa23.89■■□□□ 1.41
CLSTN3-210ENST00000540931 NUTM2GQ5VZR2 741 aa23.88■■□□□ 1.41
CLSTN3-210ENST00000540931 KIF20BQ96Q89 1820 aa23.88■■□□□ 1.41
CLSTN3-210ENST00000540931 CPDO75976 1380 aa23.88■■□□□ 1.41
CLSTN3-210ENST00000540931 SRCAPQ6ZRS2 3230 aa23.88■■□□□ 1.41
CLSTN3-210ENST00000540931 GGNBP2Q9H3C7 697 aa23.85■■□□□ 1.41
CLSTN3-210ENST00000540931 ATRNO75882 1429 aa23.84■■□□□ 1.41
CLSTN3-210ENST00000540931 DDX10Q13206 875 aaKnown RBP23.84■■□□□ 1.41
CLSTN3-210ENST00000540931 AMER1Q5JTC6 1135 aaPredicted RBP23.84■■□□□ 1.41
CLSTN3-210ENST00000540931 CABLES1Q8TDN4 633 aa23.84■■□□□ 1.41
CLSTN3-210ENST00000540931 CRYBG1Q9Y4K1 1723 aa23.84■■□□□ 1.41
CLSTN3-210ENST00000540931 PHRF1Q9P1Y6 1649 aaKnown RBP23.84■■□□□ 1.41
CLSTN3-210ENST00000540931 KIF24Q5T7B8 1368 aa23.83■■□□□ 1.41
CLSTN3-210ENST00000540931 PRDM11Q9NQV5 511 aa23.83■■□□□ 1.41
CLSTN3-210ENST00000540931 ABCA3Q99758 1704 aa23.83■■□□□ 1.41
CLSTN3-210ENST00000540931 MORC1Q86VD1 984 aa23.82■■□□□ 1.4
CLSTN3-210ENST00000540931 AATKQ6ZMQ8 1374 aa23.81■■□□□ 1.4
CLSTN3-210ENST00000540931 ABCC6O95255 1503 aa23.81■■□□□ 1.4
CLSTN3-210ENST00000540931 ANKRD26Q9UPS8 1709 aa23.81■■□□□ 1.4
CLSTN3-210ENST00000540931 MARF1Q9Y4F3 1742 aaKnown RBP23.81■■□□□ 1.4
CLSTN3-210ENST00000540931 ARHGEF25Q86VW2 580 aa23.79■■□□□ 1.4
CLSTN3-210ENST00000540931 BCL9LQ86UU0 1499 aa23.79■■□□□ 1.4
CLSTN3-210ENST00000540931 ZC3H6P61129 1189 aaKnown RBP23.78■■□□□ 1.4
CLSTN3-210ENST00000540931 COL14A1Q05707 1796 aaKnown RBP23.78■■□□□ 1.4
CLSTN3-210ENST00000540931 KIAA0232Q92628 1395 aa23.78■■□□□ 1.4
CLSTN3-210ENST00000540931 PLEKHG5O94827 1062 aa23.77■■□□□ 1.4
CLSTN3-210ENST00000540931 ZRANB1Q9UGI0 708 aa23.77■■□□□ 1.4
CLSTN3-210ENST00000540931 RTL1A6NKG5 1358 aa23.77■■□□□ 1.4
CLSTN3-210ENST00000540931 NFAT5O94916 1531 aa23.76■■□□□ 1.39
CLSTN3-210ENST00000540931 FAM83GA6ND36 823 aa23.74■■□□□ 1.39
CLSTN3-210ENST00000540931 AMPHP49418 695 aa23.74■■□□□ 1.39
CLSTN3-210ENST00000540931 RALBP1Q15311 655 aa23.74■■□□□ 1.39
CLSTN3-210ENST00000540931 CCDC125Q86Z20 511 aa23.74■■□□□ 1.39
CLSTN3-210ENST00000540931 NWD2Q9ULI1 1742 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms