RNA–Protein interactions for RNA: ENST00000537380.1

CIITA-203, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 1,062 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-203ENST00000537380 NUTM2FA1L443 756 aa12.8□□□□□ -0.36
CIITA-203ENST00000537380 NUDT16Q96DE0 195 aaKnown RBP12.8□□□□□ -0.36
CIITA-203ENST00000537380 ZNF692Q9BU19 519 aaPredicted RBP12.8□□□□□ -0.36
CIITA-203ENST00000537380 PRR36Q9H6K5 1346 aa12.8□□□□□ -0.36
CIITA-203ENST00000537380 LRP6O75581 1613 aa12.8□□□□□ -0.36
CIITA-203ENST00000537380 PNPLA6Q8IY17 1366 aa12.8□□□□□ -0.36
CIITA-203ENST00000537380 HDGFL2Q7Z4V5 671 aaPredicted RBP12.79□□□□□ -0.36
CIITA-203ENST00000537380 TMC1Q8TDI8 760 aa12.79□□□□□ -0.36
CIITA-203ENST00000537380 LRRC59Q96AG4 307 aaKnown RBP12.79□□□□□ -0.36
CIITA-203ENST00000537380 CGNL1Q0VF96 1302 aa12.79□□□□□ -0.36
CIITA-203ENST00000537380 MYBBP1AQ9BQG0 1328 aaKnown RBP12.79□□□□□ -0.36
CIITA-203ENST00000537380 BRD4O60885 1362 aaPredicted RBP12.79□□□□□ -0.36
CIITA-203ENST00000537380 ZNF772Q68DY9 489 aaPredicted RBP12.78□□□□□ -0.36
CIITA-203ENST00000537380 TRPM3Q9HCF6 1732 aaPredicted RBP12.78□□□□□ -0.36
CIITA-203ENST00000537380 A0A1W2PP64 1363 aa12.78□□□□□ -0.36
CIITA-203ENST00000537380 CABP1Q9NZU7 370 aa12.77□□□□□ -0.37
CIITA-203ENST00000537380 PHF8Q9UPP1 1060 aa12.77□□□□□ -0.37
CIITA-203ENST00000537380 EDC4Q6P2E9 1401 aaKnown RBP12.77□□□□□ -0.37
CIITA-203ENST00000537380 PPIP5K1Q6PFW1 1433 aa12.77□□□□□ -0.37
CIITA-203ENST00000537380 NSD3Q9BZ95 1437 aa12.77□□□□□ -0.37
CIITA-203ENST00000537380 NUTM2BA6NNL0 878 aaPredicted RBP12.76□□□□□ -0.37
CIITA-203ENST00000537380 NUTM2EB1AL46 878 aaPredicted RBP12.76□□□□□ -0.37
CIITA-203ENST00000537380 FOXO3O43524 673 aa12.76□□□□□ -0.37
CIITA-203ENST00000537380 NLRP13Q86W25 1043 aa12.76□□□□□ -0.37
CIITA-203ENST00000537380 NUTM2AQ8IVF1 878 aaPredicted RBP12.76□□□□□ -0.37
CIITA-203ENST00000537380 POLR3AO14802 1390 aaPredicted RBP12.76□□□□□ -0.37
CIITA-203ENST00000537380 AKAP12Q02952 1782 aa12.75□□□□□ -0.37
CIITA-203ENST00000537380 ALS2Q96Q42 1657 aa12.75□□□□□ -0.37
CIITA-203ENST00000537380 TNS3Q68CZ2 1445 aa12.74□□□□□ -0.37
CIITA-203ENST00000537380 SBNO1A3KN83 1393 aa12.74□□□□□ -0.37
CIITA-203ENST00000537380 INSRP06213 1382 aa12.74□□□□□ -0.37
CIITA-203ENST00000537380 RGS17Q9UGC6 210 aaPredicted RBP12.74□□□□□ -0.37
CIITA-203ENST00000537380 MON2Q7Z3U7 1717 aa12.74□□□□□ -0.37
CIITA-203ENST00000537380 MARF1Q9Y4F3 1742 aaKnown RBP12.74□□□□□ -0.37
CIITA-203ENST00000537380 ABCA3Q99758 1704 aa12.73□□□□□ -0.37
CIITA-203ENST00000537380 SPATA31A3Q5VYP0 1347 aa12.72□□□□□ -0.37
CIITA-203ENST00000537380 ANKRD26Q9UPS8 1709 aa12.72□□□□□ -0.37
CIITA-203ENST00000537380 XPCQ01831 940 aaPredicted RBP12.72□□□□□ -0.37
CIITA-203ENST00000537380 POTEAQ6S8J7 498 aa12.72□□□□□ -0.37
CIITA-203ENST00000537380 KRT28Q7Z3Y7 464 aa12.72□□□□□ -0.37
CIITA-203ENST00000537380 SSH2Q76I76 1423 aa12.71□□□□□ -0.37
CIITA-203ENST00000537380 CRYBG1Q9Y4K1 1723 aa12.71□□□□□ -0.37
CIITA-203ENST00000537380 PMFBP1Q8TBY8 1022 aa12.71□□□□□ -0.37
CIITA-203ENST00000537380 ACEP12821 1306 aa12.7□□□□□ -0.38
CIITA-203ENST00000537380 TTC21AQ8NDW8 1320 aa12.7□□□□□ -0.38
CIITA-203ENST00000537380 FYB1O15117 783 aa12.7□□□□□ -0.38
CIITA-203ENST00000537380 CC2D1BQ5T0F9 858 aaKnown RBP12.7□□□□□ -0.38
CIITA-203ENST00000537380 USP6P35125 1406 aa12.7□□□□□ -0.38
CIITA-203ENST00000537380 ARHGEF10O15013 1369 aa12.69□□□□□ -0.38
CIITA-203ENST00000537380 RXRBP28702 533 aa12.69□□□□□ -0.38
CIITA-203ENST00000537380 PPP2R1AP30153 589 aa12.69□□□□□ -0.38
CIITA-203ENST00000537380 PSME1Q06323 249 aa12.69□□□□□ -0.38
CIITA-203ENST00000537380 MRS2Q9HD23 443 aa12.69□□□□□ -0.38
CIITA-203ENST00000537380 NRKQ7Z2Y5 1582 aa12.69□□□□□ -0.38
CIITA-203ENST00000537380 KIF20BQ96Q89 1820 aa12.68□□□□□ -0.38
CIITA-203ENST00000537380 MORC1Q86VD1 984 aa12.68□□□□□ -0.38
CIITA-203ENST00000537380 NGDNQ8NEJ9 315 aaKnown RBP12.67□□□□□ -0.38
CIITA-203ENST00000537380 PNISRQ8TF01 805 aaKnown RBP12.67□□□□□ -0.38
CIITA-203ENST00000537380 C8orf37Q96NL8 207 aa12.67□□□□□ -0.38
CIITA-203ENST00000537380 AATKQ6ZMQ8 1374 aa12.67□□□□□ -0.38
CIITA-203ENST00000537380 USP54Q70EL1 1684 aa12.66□□□□□ -0.38
CIITA-203ENST00000537380 USP31Q70CQ4 1352 aa12.66□□□□□ -0.38
CIITA-203ENST00000537380 PHRF1Q9P1Y6 1649 aaKnown RBP12.66□□□□□ -0.38
CIITA-203ENST00000537380 AFF2P51816 1311 aa12.65□□□□□ -0.38
CIITA-203ENST00000537380 TTC21BQ7Z4L5 1316 aa12.65□□□□□ -0.38
CIITA-203ENST00000537380 NGLY1Q96IV0 654 aa12.65□□□□□ -0.38
CIITA-203ENST00000537380 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.65□□□□□ -0.38
CIITA-203ENST00000537380 CCDC184Q52MB2 194 aa12.64□□□□□ -0.39
CIITA-203ENST00000537380 ADAMTS2O95450 1211 aa12.63□□□□□ -0.39
CIITA-203ENST00000537380 OVOS2A0A0J9YW53 1432 aa12.62□□□□□ -0.39
CIITA-203ENST00000537380 OVOS2Q6IE36 1432 aa12.62□□□□□ -0.39
CIITA-203ENST00000537380 NWD2Q9ULI1 1742 aa12.62□□□□□ -0.39
CIITA-203ENST00000537380 PIK3C2AO00443 1686 aa12.62□□□□□ -0.39
CIITA-203ENST00000537380 PLCH1Q4KWH8 1693 aa12.62□□□□□ -0.39
CIITA-203ENST00000537380 HAP1P54257 671 aaPredicted RBP12.62□□□□□ -0.39
CIITA-203ENST00000537380 FNBP4Q8N3X1 1017 aaPredicted RBP12.62□□□□□ -0.39
CIITA-203ENST00000537380 COG3Q96JB2 828 aa12.62□□□□□ -0.39
CIITA-203ENST00000537380 QTRT2Q9H974 415 aaKnown RBP12.62□□□□□ -0.39
CIITA-203ENST00000537380 SMG6Q86US8 1419 aaKnown RBP12.62□□□□□ -0.39
CIITA-203ENST00000537380 CFAP53Q96M91 514 aa12.61□□□□□ -0.39
CIITA-203ENST00000537380 GGNBP2Q9H3C7 697 aa12.61□□□□□ -0.39
CIITA-203ENST00000537380 SLIT2O94813 1529 aa12.61□□□□□ -0.39
CIITA-203ENST00000537380 CENPBP07199 599 aaPredicted RBP12.6□□□□□ -0.39
CIITA-203ENST00000537380 RBM6P78332 1123 aaKnown RBP12.6□□□□□ -0.39
CIITA-203ENST00000537380 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.6□□□□□ -0.39
CIITA-203ENST00000537380 COL14A1Q05707 1796 aaKnown RBP12.6□□□□□ -0.39
CIITA-203ENST00000537380 BCL9LQ86UU0 1499 aa12.59□□□□□ -0.39
CIITA-203ENST00000537380 KIF24Q5T7B8 1368 aa12.59□□□□□ -0.39
CIITA-203ENST00000537380 PAK3O75914 559 aaPredicted RBP12.59□□□□□ -0.39
CIITA-203ENST00000537380 LMOD2Q6P5Q4 547 aa12.59□□□□□ -0.39
CIITA-203ENST00000537380 NME9Q86XW9 330 aa12.59□□□□□ -0.39
CIITA-203ENST00000537380 NGEFQ8N5V2 710 aa12.59□□□□□ -0.39
CIITA-203ENST00000537380 CABLES1Q8TDN4 633 aa12.59□□□□□ -0.39
CIITA-203ENST00000537380 USP21Q9UK80 565 aa12.59□□□□□ -0.39
CIITA-203ENST00000537380 ATRNO75882 1429 aa12.59□□□□□ -0.39
CIITA-203ENST00000537380 NRAPQ86VF7 1730 aa12.59□□□□□ -0.39
CIITA-203ENST00000537380 USP19O94966 1318 aa12.59□□□□□ -0.39
CIITA-203ENST00000537380 CDK12Q9NYV4 1490 aaPredicted RBP12.59□□□□□ -0.39
CIITA-203ENST00000537380 SLIT3O75094 1523 aa12.58□□□□□ -0.4
CIITA-203ENST00000537380 MTHFSP49914 203 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms