RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 SOS2Q07890 1332 aaPredicted RBP19.51■□□□□ 0.71
USF1-209ENST00000529476 AKAP12Q02952 1782 aa19.5■□□□□ 0.71
USF1-209ENST00000529476 RBM6P78332 1123 aaKnown RBP19.5■□□□□ 0.71
USF1-209ENST00000529476 PSME1Q06323 249 aa19.5■□□□□ 0.71
USF1-209ENST00000529476 KRT28Q7Z3Y7 464 aa19.5■□□□□ 0.71
USF1-209ENST00000529476 TRPM3Q9HCF6 1732 aaPredicted RBP19.48■□□□□ 0.71
USF1-209ENST00000529476 C8orf37Q96NL8 207 aa19.48■□□□□ 0.71
USF1-209ENST00000529476 KIF7Q2M1P5 1343 aa19.48■□□□□ 0.71
USF1-209ENST00000529476 CD163L1Q9NR16 1453 aa19.48■□□□□ 0.71
USF1-209ENST00000529476 NINLQ9Y2I6 1382 aa19.47■□□□□ 0.71
USF1-209ENST00000529476 CPSF1Q10570 1443 aaKnown RBP19.46■□□□□ 0.71
USF1-209ENST00000529476 MON2Q7Z3U7 1717 aa19.45■□□□□ 0.7
USF1-209ENST00000529476 USP6P35125 1406 aa19.44■□□□□ 0.7
USF1-209ENST00000529476 LRRC59Q96AG4 307 aaKnown RBP19.44■□□□□ 0.7
USF1-209ENST00000529476 A0A1W2PP64 1363 aa19.44■□□□□ 0.7
USF1-209ENST00000529476 SBNO1A3KN83 1393 aa19.44■□□□□ 0.7
USF1-209ENST00000529476 KTN1Q86UP2 1357 aaKnown RBP19.44■□□□□ 0.7
USF1-209ENST00000529476 CCDC7Q96M83 1385 aa19.44■□□□□ 0.7
USF1-209ENST00000529476 HDGFL2Q7Z4V5 671 aaPredicted RBP19.43■□□□□ 0.7
USF1-209ENST00000529476 ZNF692Q9BU19 519 aaPredicted RBP19.43■□□□□ 0.7
USF1-209ENST00000529476 TERF2IPQ9NYB0 399 aa19.43■□□□□ 0.7
USF1-209ENST00000529476 WASHC2AQ641Q2 1341 aa19.43■□□□□ 0.7
USF1-209ENST00000529476 ALS2Q96Q42 1657 aa19.43■□□□□ 0.7
USF1-209ENST00000529476 NRKQ7Z2Y5 1582 aa19.42■□□□□ 0.7
USF1-209ENST00000529476 PAK3O75914 559 aaPredicted RBP19.42■□□□□ 0.7
USF1-209ENST00000529476 ZRANB1Q9UGI0 708 aa19.42■□□□□ 0.7
USF1-209ENST00000529476 SPATA31A3Q5VYP0 1347 aa19.42■□□□□ 0.7
USF1-209ENST00000529476 ANKRD36BQ8N2N9 1353 aa19.42■□□□□ 0.7
USF1-209ENST00000529476 TNS3Q68CZ2 1445 aa19.42■□□□□ 0.7
USF1-209ENST00000529476 PNPLA6Q8IY17 1366 aa19.41■□□□□ 0.7
USF1-209ENST00000529476 SSH2Q76I76 1423 aa19.41■□□□□ 0.7
USF1-209ENST00000529476 LMOD2Q6P5Q4 547 aa19.39■□□□□ 0.69
USF1-209ENST00000529476 BRD4O60885 1362 aaPredicted RBP19.38■□□□□ 0.69
USF1-209ENST00000529476 ADAMTS2O95450 1211 aa19.38■□□□□ 0.69
USF1-209ENST00000529476 COL22A1Q8NFW1 1626 aaPredicted RBP19.38■□□□□ 0.69
USF1-209ENST00000529476 NGLY1Q96IV0 654 aa19.38■□□□□ 0.69
USF1-209ENST00000529476 TTC21BQ7Z4L5 1316 aa19.37■□□□□ 0.69
USF1-209ENST00000529476 PIK3C2AO00443 1686 aa19.36■□□□□ 0.69
USF1-209ENST00000529476 EDC4Q6P2E9 1401 aaKnown RBP19.36■□□□□ 0.69
USF1-209ENST00000529476 ARHGEF10O15013 1369 aa19.36■□□□□ 0.69
USF1-209ENST00000529476 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.36■□□□□ 0.69
USF1-209ENST00000529476 PLEKHG5O94827 1062 aa19.35■□□□□ 0.69
USF1-209ENST00000529476 NUTM2GQ5VZR2 741 aa19.35■□□□□ 0.69
USF1-209ENST00000529476 CARD14Q9BXL6 1004 aa19.35■□□□□ 0.69
USF1-209ENST00000529476 PANK3Q9H999 370 aa19.35■□□□□ 0.69
USF1-209ENST00000529476 ABTB2Q8N961 1025 aa19.34■□□□□ 0.69
USF1-209ENST00000529476 TTC21AQ8NDW8 1320 aa19.33■□□□□ 0.69
USF1-209ENST00000529476 ABCA3Q99758 1704 aa19.33■□□□□ 0.68
USF1-209ENST00000529476 CRYBG1Q9Y4K1 1723 aa19.33■□□□□ 0.68
USF1-209ENST00000529476 NSD3Q9BZ95 1437 aa19.33■□□□□ 0.68
USF1-209ENST00000529476 MARF1Q9Y4F3 1742 aaKnown RBP19.32■□□□□ 0.68
USF1-209ENST00000529476 NME9Q86XW9 330 aa19.32■□□□□ 0.68
USF1-209ENST00000529476 CABLES1Q8TDN4 633 aa19.32■□□□□ 0.68
USF1-209ENST00000529476 USP21Q9UK80 565 aa19.32■□□□□ 0.68
USF1-209ENST00000529476 KIF20BQ96Q89 1820 aa19.3■□□□□ 0.68
USF1-209ENST00000529476 TRPC5Q9UL62 973 aaPredicted RBP19.3■□□□□ 0.68
USF1-209ENST00000529476 PHRF1Q9P1Y6 1649 aaKnown RBP19.29■□□□□ 0.68
USF1-209ENST00000529476 NLRP6P59044 892 aa19.29■□□□□ 0.68
USF1-209ENST00000529476 USP54Q70EL1 1684 aa19.28■□□□□ 0.68
USF1-209ENST00000529476 ZNF316A6NFI3 1004 aaPredicted RBP19.28■□□□□ 0.68
USF1-209ENST00000529476 NLRP13Q86W25 1043 aa19.28■□□□□ 0.68
USF1-209ENST00000529476 FNBP4Q8N3X1 1017 aaPredicted RBP19.28■□□□□ 0.68
USF1-209ENST00000529476 ATRNO75882 1429 aa19.27■□□□□ 0.68
USF1-209ENST00000529476 USP19O94966 1318 aa19.26■□□□□ 0.67
USF1-209ENST00000529476 FYB1O15117 783 aa19.26■□□□□ 0.67
USF1-209ENST00000529476 HAP1P54257 671 aaPredicted RBP19.26■□□□□ 0.67
USF1-209ENST00000529476 CCDC125Q86Z20 511 aa19.26■□□□□ 0.67
USF1-209ENST00000529476 USP31Q70CQ4 1352 aa19.26■□□□□ 0.67
USF1-209ENST00000529476 EP400Q96L91 3159 aa19.25■□□□□ 0.67
USF1-209ENST00000529476 SLIT3O75094 1523 aa19.25■□□□□ 0.67
USF1-209ENST00000529476 OVOS2A0A0J9YW53 1432 aa19.25■□□□□ 0.67
USF1-209ENST00000529476 OVOS2Q6IE36 1432 aa19.25■□□□□ 0.67
USF1-209ENST00000529476 CGNL1Q0VF96 1302 aa19.25■□□□□ 0.67
USF1-209ENST00000529476 GGNBP2Q9H3C7 697 aa19.24■□□□□ 0.67
USF1-209ENST00000529476 PER1O15534 1290 aaPredicted RBP19.23■□□□□ 0.67
USF1-209ENST00000529476 KNSTRNQ9Y448 316 aa19.23■□□□□ 0.67
USF1-209ENST00000529476 COG3Q96JB2 828 aa19.22■□□□□ 0.67
USF1-209ENST00000529476 ANKRD26Q9UPS8 1709 aa19.22■□□□□ 0.67
USF1-209ENST00000529476 SOX12O15370 315 aa19.21■□□□□ 0.67
USF1-209ENST00000529476 GCP02774 474 aa19.21■□□□□ 0.67
USF1-209ENST00000529476 DDX10Q13206 875 aaKnown RBP19.21■□□□□ 0.67
USF1-209ENST00000529476 ZC3H6P61129 1189 aaKnown RBP19.19■□□□□ 0.66
USF1-209ENST00000529476 AMER1Q5JTC6 1135 aaPredicted RBP19.19■□□□□ 0.66
USF1-209ENST00000529476 BCL9LQ86UU0 1499 aa19.19■□□□□ 0.66
USF1-209ENST00000529476 NFAT5O94916 1531 aa19.19■□□□□ 0.66
USF1-209ENST00000529476 KIAA0232Q92628 1395 aa19.18■□□□□ 0.66
USF1-209ENST00000529476 DEFB132Q7Z7B7 95 aa19.17■□□□□ 0.66
USF1-209ENST00000529476 KCNH5Q8NCM2 988 aa19.17■□□□□ 0.66
USF1-209ENST00000529476 NSD2O96028 1365 aa19.17■□□□□ 0.66
USF1-209ENST00000529476 GJD4Q96KN9 370 aaPredicted RBP19.16■□□□□ 0.66
USF1-209ENST00000529476 LTN1O94822 1766 aa19.16■□□□□ 0.66
USF1-209ENST00000529476 PLCH1Q4KWH8 1693 aa19.15■□□□□ 0.66
USF1-209ENST00000529476 COL14A1Q05707 1796 aaKnown RBP19.15■□□□□ 0.66
USF1-209ENST00000529476 FAM83GA6ND36 823 aa19.15■□□□□ 0.66
USF1-209ENST00000529476 FBLN1P23142 703 aa19.15■□□□□ 0.66
USF1-209ENST00000529476 CNGB1Q14028 1251 aaPredicted RBP19.15■□□□□ 0.66
USF1-209ENST00000529476 PRDM11Q9NQV5 511 aa19.15■□□□□ 0.66
USF1-209ENST00000529476 CPDO75976 1380 aa19.15■□□□□ 0.66
USF1-209ENST00000529476 ZBTB7CA1YPR0 619 aa19.14■□□□□ 0.65
USF1-209ENST00000529476 CHRNA2Q15822 529 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms