RNA–Protein interactions for RNA: ENST00000528999.5

PUF60-213, Transcript of poly(U) binding splicing factor 60, human

TSL 3

Gene PUF60, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUF60-213	ENST00000528999	AATK	Q6ZMQ8	1374 aa		13.84	□□□□□ -0.19
PUF60-213	ENST00000528999	CDC42BPG	Q6DT37	1551 aa		13.84	□□□□□ -0.19
PUF60-213	ENST00000528999	ANP32A	P39687	249 aa	Known RBP	13.84	□□□□□ -0.19
PUF60-213	ENST00000528999	RARS	P54136	660 aa	Known RBP	13.84	□□□□□ -0.19
PUF60-213	ENST00000528999	MAPK8IP3	Q9UPT6	1336 aa		13.84	□□□□□ -0.19
PUF60-213	ENST00000528999	CPS1	P31327	1500 aa		13.84	□□□□□ -0.19
PUF60-213	ENST00000528999	TMPO	P42166	694 aa	Known RBP	13.83	□□□□□ -0.2
PUF60-213	ENST00000528999	NUDT16	Q96DE0	195 aa	Known RBP	13.83	□□□□□ -0.2
PUF60-213	ENST00000528999	BACH2	Q9BYV9	841 aa		13.83	□□□□□ -0.2
PUF60-213	ENST00000528999	DMRT2	Q9Y5R5	561 aa		13.83	□□□□□ -0.2
PUF60-213	ENST00000528999	BCAR3	O75815	825 aa		13.82	□□□□□ -0.2
PUF60-213	ENST00000528999	NEFM	P07197	916 aa		13.82	□□□□□ -0.2
PUF60-213	ENST00000528999	PDE4A	P27815	886 aa		13.82	□□□□□ -0.2
PUF60-213	ENST00000528999	ZNF428	Q96B54	188 aa		13.82	□□□□□ -0.2
PUF60-213	ENST00000528999	EID1	Q9Y6B2	187 aa		13.82	□□□□□ -0.2
PUF60-213	ENST00000528999	MSH5	O43196	834 aa		13.81	□□□□□ -0.2
PUF60-213	ENST00000528999	CALD1	Q05682	793 aa	Known RBP	13.81	□□□□□ -0.2
PUF60-213	ENST00000528999	POLK	Q9UBT6	870 aa		13.81	□□□□□ -0.2
PUF60-213	ENST00000528999	TBX22	Q9Y458	520 aa		13.81	□□□□□ -0.2
PUF60-213	ENST00000528999	UBR1	Q8IWV7	1749 aa		13.81	□□□□□ -0.2
PUF60-213	ENST00000528999	PPIP5K1	Q6PFW1	1433 aa		13.81	□□□□□ -0.2
PUF60-213	ENST00000528999	KIF20B	Q96Q89	1820 aa		13.8	□□□□□ -0.2
PUF60-213	ENST00000528999	PLEKHG3	A1L390	1219 aa		13.8	□□□□□ -0.2
PUF60-213	ENST00000528999	U2SURP	O15042	1029 aa	Known RBP	13.8	□□□□□ -0.2
PUF60-213	ENST00000528999	NEUROD2	Q15784	382 aa		13.8	□□□□□ -0.2
PUF60-213	ENST00000528999	ERICH6	Q7L0X2	663 aa		13.8	□□□□□ -0.2
PUF60-213	ENST00000528999	TXNDC2	Q86VQ3	553 aa		13.8	□□□□□ -0.2
PUF60-213	ENST00000528999	IPO9	Q96P70	1041 aa	Known RBP	13.8	□□□□□ -0.2
PUF60-213	ENST00000528999	RRP7A	Q9Y3A4	280 aa	Known RBP	13.79	□□□□□ -0.2
PUF60-213	ENST00000528999	ADAMTS13	Q76LX8	1427 aa		13.79	□□□□□ -0.2
PUF60-213	ENST00000528999	CANX	P27824	592 aa	Known RBP	13.78	□□□□□ -0.2
PUF60-213	ENST00000528999	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.78	□□□□□ -0.2
PUF60-213	ENST00000528999	PMFBP1	Q8TBY8	1022 aa		13.78	□□□□□ -0.2
PUF60-213	ENST00000528999	COG3	Q96JB2	828 aa		13.78	□□□□□ -0.2
PUF60-213	ENST00000528999	TRIM35	Q9UPQ4	493 aa		13.78	□□□□□ -0.2
PUF60-213	ENST00000528999	ARHGAP23	Q9P227	1491 aa		13.78	□□□□□ -0.2
PUF60-213	ENST00000528999	SLIT1	O75093	1534 aa		13.78	□□□□□ -0.2
PUF60-213	ENST00000528999	CLUAP1	Q96AJ1	413 aa		13.77	□□□□□ -0.21
PUF60-213	ENST00000528999	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.76	□□□□□ -0.21
PUF60-213	ENST00000528999	RIPK4	P57078	832 aa		13.76	□□□□□ -0.21
PUF60-213	ENST00000528999	IL13	P35225	146 aa		13.75	□□□□□ -0.21
PUF60-213	ENST00000528999	BRPF1	P55201	1214 aa	Predicted RBP	13.75	□□□□□ -0.21
PUF60-213	ENST00000528999	LMOD3	Q0VAK6	560 aa		13.75	□□□□□ -0.21
PUF60-213	ENST00000528999	ALDH1L2	Q3SY69	923 aa		13.75	□□□□□ -0.21
PUF60-213	ENST00000528999	ZKSCAN2	Q63HK3	967 aa		13.75	□□□□□ -0.21
PUF60-213	ENST00000528999	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
PUF60-213	ENST00000528999	RSPH6A	Q9H0K4	717 aa		13.75	□□□□□ -0.21
PUF60-213	ENST00000528999	IPO8	O15397	1037 aa	Known RBP	13.74	□□□□□ -0.21
PUF60-213	ENST00000528999	LTK	P29376	864 aa		13.74	□□□□□ -0.21
PUF60-213	ENST00000528999	NOP58	Q9Y2X3	529 aa	Known RBP	13.74	□□□□□ -0.21
PUF60-213	ENST00000528999	PIK3R4	Q99570	1358 aa		13.73	□□□□□ -0.21
PUF60-213	ENST00000528999	ROBO2	Q9HCK4	1378 aa		13.73	□□□□□ -0.21
PUF60-213	ENST00000528999	NFE2L2	Q16236	605 aa		13.73	□□□□□ -0.21
PUF60-213	ENST00000528999	FAM161A	Q3B820	660 aa		13.73	□□□□□ -0.21
PUF60-213	ENST00000528999	SENP3	Q9H4L4	574 aa	Predicted RBP	13.73	□□□□□ -0.21
PUF60-213	ENST00000528999	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.73	□□□□□ -0.21
PUF60-213	ENST00000528999	DIP2A	Q14689	1571 aa		13.73	□□□□□ -0.21
PUF60-213	ENST00000528999	MON2	Q7Z3U7	1717 aa		13.73	□□□□□ -0.21
PUF60-213	ENST00000528999	DDRGK1	Q96HY6	314 aa		13.72	□□□□□ -0.21
PUF60-213	ENST00000528999	CHMP4B	Q9H444	224 aa	Known RBP	13.72	□□□□□ -0.21
PUF60-213	ENST00000528999	RWDD1	Q9H446	243 aa	Predicted RBP	13.72	□□□□□ -0.21
PUF60-213	ENST00000528999	PTCH1	Q13635	1447 aa		13.72	□□□□□ -0.21
PUF60-213	ENST00000528999	AKAP12	Q02952	1782 aa		13.71	□□□□□ -0.21
PUF60-213	ENST00000528999	TTC21A	Q8NDW8	1320 aa		13.71	□□□□□ -0.21
PUF60-213	ENST00000528999	EXOSC9	Q06265	439 aa	Known RBP	13.71	□□□□□ -0.21
PUF60-213	ENST00000528999	NME9	Q86XW9	330 aa		13.71	□□□□□ -0.21
PUF60-213	ENST00000528999	FRAT1	Q92837	279 aa	Predicted RBP	13.71	□□□□□ -0.21
PUF60-213	ENST00000528999	TTC21B	Q7Z4L5	1316 aa		13.7	□□□□□ -0.22
PUF60-213	ENST00000528999	PRR36	Q9H6K5	1346 aa		13.7	□□□□□ -0.22
PUF60-213	ENST00000528999	PRKAR2B	P31323	418 aa		13.7	□□□□□ -0.22
PUF60-213	ENST00000528999	GNAI1	P63096	354 aa		13.7	□□□□□ -0.22
PUF60-213	ENST00000528999	MVP	Q14764	893 aa	Known RBP	13.7	□□□□□ -0.22
PUF60-213	ENST00000528999	DZIP1L	Q8IYY4	767 aa	Known RBP	13.7	□□□□□ -0.22
PUF60-213	ENST00000528999	PANK1	Q8TE04	598 aa		13.7	□□□□□ -0.22
PUF60-213	ENST00000528999	COG6	Q9Y2V7	657 aa		13.7	□□□□□ -0.22
PUF60-213	ENST00000528999	C3	P01024	1663 aa		13.69	□□□□□ -0.22
PUF60-213	ENST00000528999	KIF16B	Q96L93	1317 aa		13.69	□□□□□ -0.22
PUF60-213	ENST00000528999	ARHGAP45	Q92619	1136 aa		13.69	□□□□□ -0.22
PUF60-213	ENST00000528999	IFT57	Q9NWB7	429 aa		13.69	□□□□□ -0.22
PUF60-213	ENST00000528999	AMOTL2	Q9Y2J4	779 aa		13.69	□□□□□ -0.22
PUF60-213	ENST00000528999	USP31	Q70CQ4	1352 aa		13.69	□□□□□ -0.22
PUF60-213	ENST00000528999	HAP1	P54257	671 aa	Predicted RBP	13.68	□□□□□ -0.22
PUF60-213	ENST00000528999	DDX19B	Q9UMR2	479 aa		13.68	□□□□□ -0.22
PUF60-213	ENST00000528999	ITSN1	Q15811	1721 aa		13.67	□□□□□ -0.22
PUF60-213	ENST00000528999	ACE	P12821	1306 aa		13.67	□□□□□ -0.22
PUF60-213	ENST00000528999	SSH2	Q76I76	1423 aa		13.67	□□□□□ -0.22
PUF60-213	ENST00000528999	PPM1G	O15355	546 aa	Predicted RBP	13.67	□□□□□ -0.22
PUF60-213	ENST00000528999	IGHD	P01880	384 aa		13.67	□□□□□ -0.22
PUF60-213	ENST00000528999	ZNF853	P0CG23	659 aa		13.67	□□□□□ -0.22
PUF60-213	ENST00000528999	ATF7IP	Q6VMQ6	1270 aa		13.67	□□□□□ -0.22
PUF60-213	ENST00000528999	SMC4	Q9NTJ3	1288 aa		13.67	□□□□□ -0.22
PUF60-213	ENST00000528999	USP6	P35125	1406 aa		13.66	□□□□□ -0.22
PUF60-213	ENST00000528999	PTPRU	Q92729	1446 aa		13.66	□□□□□ -0.22
PUF60-213	ENST00000528999	LRRC7	Q96NW7	1537 aa		13.66	□□□□□ -0.22
PUF60-213	ENST00000528999	FTSJ3	Q8IY81	847 aa	Known RBP	13.66	□□□□□ -0.22
PUF60-213	ENST00000528999	SSH1	Q8WYL5	1049 aa		13.66	□□□□□ -0.22
PUF60-213	ENST00000528999	EMILIN1	Q9Y6C2	1016 aa		13.66	□□□□□ -0.22
PUF60-213	ENST00000528999	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.66	□□□□□ -0.22
PUF60-213	ENST00000528999	MAP2	P11137	1827 aa	Known RBP	13.66	□□□□□ -0.22
PUF60-213	ENST00000528999	TOPAZ1	Q8N9V7	1692 aa		13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms