RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 PLEKHF1Q96S99 279 aa19.86■□□□□ 0.77
USH1C-207ENST00000527720 PNNQ9H307 717 aaKnown RBP19.86■□□□□ 0.77
USH1C-207ENST00000527720 MAP2P11137 1827 aaKnown RBP19.86■□□□□ 0.77
USH1C-207ENST00000527720 CT47B1P0C2W7 299 aaPredicted RBP19.86■□□□□ 0.77
USH1C-207ENST00000527720 TNRQ92752 1358 aa19.84■□□□□ 0.77
USH1C-207ENST00000527720 CANXP27824 592 aaKnown RBP19.84■□□□□ 0.77
USH1C-207ENST00000527720 WAPLQ7Z5K2 1190 aa19.84■□□□□ 0.77
USH1C-207ENST00000527720 MON2Q7Z3U7 1717 aa19.84■□□□□ 0.77
USH1C-207ENST00000527720 CPSF1Q10570 1443 aaKnown RBP19.83■□□□□ 0.77
USH1C-207ENST00000527720 EDC4Q6P2E9 1401 aaKnown RBP19.83■□□□□ 0.76
USH1C-207ENST00000527720 AKAP12Q02952 1782 aa19.83■□□□□ 0.76
USH1C-207ENST00000527720 MAPK8IP3Q9UPT6 1336 aa19.82■□□□□ 0.76
USH1C-207ENST00000527720 U2SURPO15042 1029 aaKnown RBP19.82■□□□□ 0.76
USH1C-207ENST00000527720 DIAPH1O60610 1272 aaKnown RBP19.82■□□□□ 0.76
USH1C-207ENST00000527720 METP08581 1390 aa19.82■□□□□ 0.76
USH1C-207ENST00000527720 WASLO00401 505 aaPredicted RBP19.82■□□□□ 0.76
USH1C-207ENST00000527720 ZBTB47Q9UFB7 747 aaPredicted RBP19.82■□□□□ 0.76
USH1C-207ENST00000527720 IL16Q14005 1332 aa19.81■□□□□ 0.76
USH1C-207ENST00000527720 ITSN1Q15811 1721 aa19.81■□□□□ 0.76
USH1C-207ENST00000527720 TMPOP42166 694 aaKnown RBP19.81■□□□□ 0.76
USH1C-207ENST00000527720 VIRMAQ69YN4 1812 aaKnown RBP19.8■□□□□ 0.76
USH1C-207ENST00000527720 CLUAP1Q96AJ1 413 aa19.8■□□□□ 0.76
USH1C-207ENST00000527720 PPIP5K1Q6PFW1 1433 aa19.8■□□□□ 0.76
USH1C-207ENST00000527720 TMEM2Q9UHN6 1383 aa19.79■□□□□ 0.76
USH1C-207ENST00000527720 PAK3O75914 559 aaPredicted RBP19.77■□□□□ 0.76
USH1C-207ENST00000527720 FCHSD2O94868 740 aa19.77■□□□□ 0.76
USH1C-207ENST00000527720 PANK1Q8TE04 598 aa19.77■□□□□ 0.76
USH1C-207ENST00000527720 TRIM35Q9UPQ4 493 aa19.77■□□□□ 0.76
USH1C-207ENST00000527720 FRAT1Q92837 279 aaPredicted RBP19.77■□□□□ 0.75
USH1C-207ENST00000527720 COG6Q9Y2V7 657 aa19.77■□□□□ 0.75
USH1C-207ENST00000527720 C3P01024 1663 aa19.76■□□□□ 0.75
USH1C-207ENST00000527720 LRRC7Q96NW7 1537 aa19.76■□□□□ 0.75
USH1C-207ENST00000527720 FAM161AQ3B820 660 aa19.76■□□□□ 0.75
USH1C-207ENST00000527720 SKAP1Q86WV1 359 aa19.76■□□□□ 0.75
USH1C-207ENST00000527720 POLKQ9UBT6 870 aa19.75■□□□□ 0.75
USH1C-207ENST00000527720 AATKQ6ZMQ8 1374 aa19.75■□□□□ 0.75
USH1C-207ENST00000527720 CDK12Q9NYV4 1490 aaPredicted RBP19.75■□□□□ 0.75
USH1C-207ENST00000527720 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.74■□□□□ 0.75
USH1C-207ENST00000527720 NPM2Q86SE8 214 aaKnown RBP19.74■□□□□ 0.75
USH1C-207ENST00000527720 TXNDC2Q86VQ3 553 aa19.74■□□□□ 0.75
USH1C-207ENST00000527720 PMFBP1Q8TBY8 1022 aa19.73■□□□□ 0.75
USH1C-207ENST00000527720 NUDT16Q96DE0 195 aaKnown RBP19.73■□□□□ 0.75
USH1C-207ENST00000527720 CCDC61Q9Y6R9 512 aa19.73■□□□□ 0.75
USH1C-207ENST00000527720 IGHDP01880 384 aa19.72■□□□□ 0.75
USH1C-207ENST00000527720 RIPK4P57078 832 aa19.72■□□□□ 0.75
USH1C-207ENST00000527720 TOPAZ1Q8N9V7 1692 aa19.72■□□□□ 0.75
USH1C-207ENST00000527720 ADAMTS13Q76LX8 1427 aa19.72■□□□□ 0.75
USH1C-207ENST00000527720 PLEKHG1Q9ULL1 1385 aa19.72■□□□□ 0.75
USH1C-207ENST00000527720 DDRGK1Q96HY6 314 aa19.72■□□□□ 0.75
USH1C-207ENST00000527720 NEFMP07197 916 aa19.71■□□□□ 0.75
USH1C-207ENST00000527720 ZNF692Q9BU19 519 aaPredicted RBP19.71■□□□□ 0.75
USH1C-207ENST00000527720 C8orf34Q49A92 452 aa19.71■□□□□ 0.75
USH1C-207ENST00000527720 ZKSCAN2Q63HK3 967 aa19.71■□□□□ 0.75
USH1C-207ENST00000527720 RSPH6AQ9H0K4 717 aa19.71■□□□□ 0.75
USH1C-207ENST00000527720 RLBP1P12271 317 aa19.69■□□□□ 0.74
USH1C-207ENST00000527720 EXOSC9Q06265 439 aaKnown RBP19.69■□□□□ 0.74
USH1C-207ENST00000527720 TSR2Q969E8 191 aaKnown RBP19.69■□□□□ 0.74
USH1C-207ENST00000527720 NRKQ7Z2Y5 1582 aa19.69■□□□□ 0.74
USH1C-207ENST00000527720 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.68■□□□□ 0.74
USH1C-207ENST00000527720 MVPQ14764 893 aaKnown RBP19.68■□□□□ 0.74
USH1C-207ENST00000527720 BCL2L13Q9BXK5 485 aa19.68■□□□□ 0.74
USH1C-207ENST00000527720 RGS3P49796 1198 aa19.67■□□□□ 0.74
USH1C-207ENST00000527720 DZIP1LQ8IYY4 767 aaKnown RBP19.67■□□□□ 0.74
USH1C-207ENST00000527720 COG3Q96JB2 828 aa19.67■□□□□ 0.74
USH1C-207ENST00000527720 ROBO2Q9HCK4 1378 aa19.66■□□□□ 0.74
USH1C-207ENST00000527720 PRKAR2BP31323 418 aa19.66■□□□□ 0.74
USH1C-207ENST00000527720 NME9Q86XW9 330 aa19.66■□□□□ 0.74
USH1C-207ENST00000527720 DLG5Q8TDM6 1919 aa19.66■□□□□ 0.74
USH1C-207ENST00000527720 SLIT1O75093 1534 aa19.66■□□□□ 0.74
USH1C-207ENST00000527720 SMC4Q9NTJ3 1288 aa19.65■□□□□ 0.74
USH1C-207ENST00000527720 PPM1GO15355 546 aaPredicted RBP19.65■□□□□ 0.74
USH1C-207ENST00000527720 IL13P35225 146 aa19.65■□□□□ 0.74
USH1C-207ENST00000527720 CALD1Q05682 793 aaKnown RBP19.65■□□□□ 0.74
USH1C-207ENST00000527720 ZNF428Q96B54 188 aa19.65■□□□□ 0.74
USH1C-207ENST00000527720 FTSJ3Q8IY81 847 aaKnown RBP19.64■□□□□ 0.74
USH1C-207ENST00000527720 NFE2L2Q16236 605 aa19.64■□□□□ 0.73
USH1C-207ENST00000527720 ALDH1L2Q3SY69 923 aa19.64■□□□□ 0.73
USH1C-207ENST00000527720 RWDD1Q9H446 243 aaPredicted RBP19.64■□□□□ 0.73
USH1C-207ENST00000527720 TNNQ9UQP3 1299 aa19.64■□□□□ 0.73
USH1C-207ENST00000527720 FER1L4A9Z1Z3 1794 aa19.64■□□□□ 0.73
USH1C-207ENST00000527720 PCDHB15Q9Y5E8 787 aa19.63■□□□□ 0.73
USH1C-207ENST00000527720 EMILIN1Q9Y6C2 1016 aa19.63■□□□□ 0.73
USH1C-207ENST00000527720 NALCNQ8IZF0 1738 aa19.63■□□□□ 0.73
USH1C-207ENST00000527720 PRR36Q9H6K5 1346 aa19.63■□□□□ 0.73
USH1C-207ENST00000527720 ARHGAP23Q9P227 1491 aa19.63■□□□□ 0.73
USH1C-207ENST00000527720 SSH1Q8WYL5 1049 aa19.63■□□□□ 0.73
USH1C-207ENST00000527720 KIF16BQ96L93 1317 aa19.62■□□□□ 0.73
USH1C-207ENST00000527720 ATF7IPQ6VMQ6 1270 aa19.62■□□□□ 0.73
USH1C-207ENST00000527720 DIP2AQ14689 1571 aa19.61■□□□□ 0.73
USH1C-207ENST00000527720 FBLN1P23142 703 aa19.61■□□□□ 0.73
USH1C-207ENST00000527720 DDX19BQ9UMR2 479 aa19.61■□□□□ 0.73
USH1C-207ENST00000527720 IPO8O15397 1037 aaKnown RBP19.6■□□□□ 0.73
USH1C-207ENST00000527720 LTKP29376 864 aa19.6■□□□□ 0.73
USH1C-207ENST00000527720 BRPF1P55201 1214 aaPredicted RBP19.6■□□□□ 0.73
USH1C-207ENST00000527720 PLEKHG3A1L390 1219 aa19.6■□□□□ 0.73
USH1C-207ENST00000527720 TRIM27P14373 513 aa19.6■□□□□ 0.73
USH1C-207ENST00000527720 EID1Q9Y6B2 187 aa19.6■□□□□ 0.73
USH1C-207ENST00000527720 NCKAP5LQ9HCH0 1330 aa19.59■□□□□ 0.73
USH1C-207ENST00000527720 LMOD3Q0VAK6 560 aa19.59■□□□□ 0.73
USH1C-207ENST00000527720 ZRANB1Q9UGI0 708 aa19.58■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms