RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 AMER1Q5JTC6 1135 aaPredicted RBP16.82■□□□□ 0.28
SYNPO-205ENST00000522122 TOMM22Q9NS69 142 aa16.82■□□□□ 0.28
SYNPO-205ENST00000522122 DNAJC5BQ9UF47 199 aa16.82■□□□□ 0.28
SYNPO-205ENST00000522122 A2MP01023 1474 aa16.82■□□□□ 0.28
SYNPO-205ENST00000522122 RPGRIP1LQ68CZ1 1315 aa16.82■□□□□ 0.28
SYNPO-205ENST00000522122 GCC1Q96CN9 775 aa16.82■□□□□ 0.28
SYNPO-205ENST00000522122 TSR2Q969E8 191 aaKnown RBP16.81■□□□□ 0.28
SYNPO-205ENST00000522122 PLEKHH1Q9ULM0 1364 aa16.81■□□□□ 0.28
SYNPO-205ENST00000522122 ATF7IPQ6VMQ6 1270 aa16.81■□□□□ 0.28
SYNPO-205ENST00000522122 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.8■□□□□ 0.28
SYNPO-205ENST00000522122 CCDC9Q9Y3X0 531 aaKnown RBP16.8■□□□□ 0.28
SYNPO-205ENST00000522122 MCM4P33991 863 aa16.8■□□□□ 0.28
SYNPO-205ENST00000522122 MCTP1Q6DN14 999 aa16.8■□□□□ 0.28
SYNPO-205ENST00000522122 KDM2BQ8NHM5 1336 aa16.8■□□□□ 0.28
SYNPO-205ENST00000522122 ARHGEF5Q12774 1597 aa16.79■□□□□ 0.28
SYNPO-205ENST00000522122 IGHDP01880 384 aa16.79■□□□□ 0.28
SYNPO-205ENST00000522122 HSP90AB4PQ58FF6 505 aa16.79■□□□□ 0.28
SYNPO-205ENST00000522122 MAST1Q9Y2H9 1570 aa16.78■□□□□ 0.28
SYNPO-205ENST00000522122 RNF20Q5VTR2 975 aa16.78■□□□□ 0.28
SYNPO-205ENST00000522122 CYB5RLQ6IPT4 315 aa16.78■□□□□ 0.28
SYNPO-205ENST00000522122 PRKAR2BP31323 418 aa16.77■□□□□ 0.28
SYNPO-205ENST00000522122 OSCARQ8IYS5 282 aa16.77■□□□□ 0.28
SYNPO-205ENST00000522122 CIZ1Q9ULV3 898 aaPredicted RBP16.77■□□□□ 0.28
SYNPO-205ENST00000522122 DENND4BO75064 1496 aaPredicted RBP16.77■□□□□ 0.28
SYNPO-205ENST00000522122 DDX58O95786 925 aaKnown RBP16.77■□□□□ 0.28
SYNPO-205ENST00000522122 RASSF8Q8NHQ8 419 aa16.77■□□□□ 0.28
SYNPO-205ENST00000522122 SMC3Q9UQE7 1217 aa16.77■□□□□ 0.28
SYNPO-205ENST00000522122 G3BP1Q13283 466 aaKnown RBP eCLIP16.77■□□□□ 0.27
SYNPO-205ENST00000522122 LRRFIP1Q32MZ4 808 aaKnown RBP16.77■□□□□ 0.27
SYNPO-205ENST00000522122 NSD2O96028 1365 aa16.76■□□□□ 0.27
SYNPO-205ENST00000522122 CPLX2Q6PUV4 134 aaKnown RBP16.75■□□□□ 0.27
SYNPO-205ENST00000522122 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.75■□□□□ 0.27
SYNPO-205ENST00000522122 TTC5Q8N0Z6 440 aa16.75■□□□□ 0.27
SYNPO-205ENST00000522122 VPS37CA5D8V6 355 aaPredicted RBP16.75■□□□□ 0.27
SYNPO-205ENST00000522122 ABCC11Q96J66 1382 aa16.75■□□□□ 0.27
SYNPO-205ENST00000522122 CEP170Q5SW79 1584 aa16.75■□□□□ 0.27
SYNPO-205ENST00000522122 CHD1LQ86WJ1 897 aa16.75■□□□□ 0.27
SYNPO-205ENST00000522122 GRPEL1Q9HAV7 217 aa16.75■□□□□ 0.27
SYNPO-205ENST00000522122 ERC2O15083 957 aa16.74■□□□□ 0.27
SYNPO-205ENST00000522122 CREBRFQ8IUR6 639 aa16.74■□□□□ 0.27
SYNPO-205ENST00000522122 TBC1D2Q9BYX2 928 aa16.74■□□□□ 0.27
SYNPO-205ENST00000522122 TBC1D32Q96NH3 1257 aa16.74■□□□□ 0.27
SYNPO-205ENST00000522122 NASPP49321 788 aaPredicted RBP16.74■□□□□ 0.27
SYNPO-205ENST00000522122 RABEP1Q15276 862 aa16.74■□□□□ 0.27
SYNPO-205ENST00000522122 KDM5DQ9BY66 1539 aa16.74■□□□□ 0.27
SYNPO-205ENST00000522122 ADGRF5Q8IZF2 1346 aa16.73■□□□□ 0.27
SYNPO-205ENST00000522122 CCDC173Q0VFZ6 552 aa16.73■□□□□ 0.27
SYNPO-205ENST00000522122 TWISTNBQ3B726 338 aaPredicted RBP16.73■□□□□ 0.27
SYNPO-205ENST00000522122 BICD2Q8TD16 824 aa16.73■□□□□ 0.27
SYNPO-205ENST00000522122 POLR3AO14802 1390 aaPredicted RBP16.73■□□□□ 0.27
SYNPO-205ENST00000522122 NPC1L1Q9UHC9 1359 aa16.73■□□□□ 0.27
SYNPO-205ENST00000522122 K7ELQ4 463 aaPredicted RBP16.73■□□□□ 0.27
SYNPO-205ENST00000522122 UBTFL1P0CB47 393 aaPredicted RBP16.73■□□□□ 0.27
SYNPO-205ENST00000522122 PLCH2O75038 1416 aa16.73■□□□□ 0.27
SYNPO-205ENST00000522122 LRRIQ1Q96JM4 1722 aa16.73■□□□□ 0.27
SYNPO-205ENST00000522122 ATAD2Q6PL18 1390 aa16.72■□□□□ 0.27
SYNPO-205ENST00000522122 GNAI3P08754 354 aa16.72■□□□□ 0.27
SYNPO-205ENST00000522122 ZNF428Q96B54 188 aa16.72■□□□□ 0.27
SYNPO-205ENST00000522122 TPM3P06753 285 aa16.72■□□□□ 0.27
SYNPO-205ENST00000522122 TMPOP42166 694 aaKnown RBP16.72■□□□□ 0.27
SYNPO-205ENST00000522122 POLR1AO95602 1720 aaPredicted RBP16.71■□□□□ 0.27
SYNPO-205ENST00000522122 VSIG10Q8N0Z9 540 aa16.71■□□□□ 0.27
SYNPO-205ENST00000522122 PSME1Q06323 249 aa16.71■□□□□ 0.27
SYNPO-205ENST00000522122 BCORL1Q5H9F3 1711 aa16.71■□□□□ 0.27
SYNPO-205ENST00000522122 GTF2E1P29083 439 aaPredicted RBP16.71■□□□□ 0.27
SYNPO-205ENST00000522122 TPM2P07951 284 aa16.7■□□□□ 0.26
SYNPO-205ENST00000522122 TMEM57Q8N5G2 664 aa16.7■□□□□ 0.26
SYNPO-205ENST00000522122 FAM13BQ9NYF5 915 aa16.7■□□□□ 0.26
SYNPO-205ENST00000522122 ABCC10Q5T3U5 1492 aa16.7■□□□□ 0.26
SYNPO-205ENST00000522122 CPLX1O14810 134 aa16.7■□□□□ 0.26
SYNPO-205ENST00000522122 PRAM1Q96QH2 718 aa16.7■□□□□ 0.26
SYNPO-205ENST00000522122 CLSTN1O94985 981 aa16.7■□□□□ 0.26
SYNPO-205ENST00000522122 SYNE3Q6ZMZ3 975 aa16.7■□□□□ 0.26
SYNPO-205ENST00000522122 NEK4P51957 841 aa16.69■□□□□ 0.26
SYNPO-205ENST00000522122 C1orf115Q9H7X2 142 aa16.69■□□□□ 0.26
SYNPO-205ENST00000522122 ADGRL1O94910 1474 aa16.69■□□□□ 0.26
SYNPO-205ENST00000522122 ALDH1L2Q3SY69 923 aa16.69■□□□□ 0.26
SYNPO-205ENST00000522122 GOLGA6L1Q8N7Z2 621 aa16.69■□□□□ 0.26
SYNPO-205ENST00000522122 AKAP17AQ02040 695 aaKnown RBP16.69■□□□□ 0.26
SYNPO-205ENST00000522122 NOS1P29475 1434 aa16.69■□□□□ 0.26
SYNPO-205ENST00000522122 ADCY10Q96PN6 1610 aa16.68■□□□□ 0.26
SYNPO-205ENST00000522122 NLRP6P59044 892 aa16.68■□□□□ 0.26
SYNPO-205ENST00000522122 MCM2P49736 904 aa16.68■□□□□ 0.26
SYNPO-205ENST00000522122 MBD3O95983 291 aa16.67■□□□□ 0.26
SYNPO-205ENST00000522122 CROCC2H7BZ55 1655 aa16.67■□□□□ 0.26
SYNPO-205ENST00000522122 TPD52L1Q16890 204 aaPredicted RBP16.67■□□□□ 0.26
SYNPO-205ENST00000522122 CCDC27Q2M243 656 aa16.67■□□□□ 0.26
SYNPO-205ENST00000522122 CCDC30Q5VVM6 783 aa16.67■□□□□ 0.26
SYNPO-205ENST00000522122 CAVIN1Q6NZI2 390 aaKnown RBP16.67■□□□□ 0.26
SYNPO-205ENST00000522122 ZNF592Q92610 1267 aa16.67■□□□□ 0.26
SYNPO-205ENST00000522122 SURF6O75683 361 aaKnown RBP16.67■□□□□ 0.26
SYNPO-205ENST00000522122 CLASRPQ8N2M8 674 aaKnown RBP16.67■□□□□ 0.26
SYNPO-205ENST00000522122 SSH1Q8WYL5 1049 aa16.67■□□□□ 0.26
SYNPO-205ENST00000522122 FCHSD2O94868 740 aa16.66■□□□□ 0.26
SYNPO-205ENST00000522122 SASS6Q6UVJ0 657 aa16.66■□□□□ 0.26
SYNPO-205ENST00000522122 GAS2L2Q8NHY3 880 aa16.66■□□□□ 0.26
SYNPO-205ENST00000522122 FAM69CQ0P6D2 419 aa16.66■□□□□ 0.26
SYNPO-205ENST00000522122 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.66■□□□□ 0.26
SYNPO-205ENST00000522122 TNNT3P45378 269 aaPredicted RBP16.66■□□□□ 0.26
SYNPO-205ENST00000522122 TRIM29Q14134 588 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms