RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 PAK3O75914 559 aaPredicted RBP12.72□□□□□ -0.37
NUP54-207ENST00000508583 HSPA5P11021 654 aaKnown RBP12.72□□□□□ -0.37
NUP54-207ENST00000508583 HDGFL2Q7Z4V5 671 aaPredicted RBP12.72□□□□□ -0.37
NUP54-207ENST00000508583 TMC1Q8TDI8 760 aa12.72□□□□□ -0.37
NUP54-207ENST00000508583 LMOD2Q6P5Q4 547 aa12.71□□□□□ -0.37
NUP54-207ENST00000508583 USP6P35125 1406 aa12.71□□□□□ -0.38
NUP54-207ENST00000508583 HAP1P54257 671 aaPredicted RBP12.7□□□□□ -0.38
NUP54-207ENST00000508583 MEX3CQ5U5Q3 659 aaKnown RBP12.7□□□□□ -0.38
NUP54-207ENST00000508583 ABCA3Q99758 1704 aa12.7□□□□□ -0.38
NUP54-207ENST00000508583 ALS2Q96Q42 1657 aa12.7□□□□□ -0.38
NUP54-207ENST00000508583 KTN1Q86UP2 1357 aaKnown RBP12.69□□□□□ -0.38
NUP54-207ENST00000508583 AKAP12Q02952 1782 aa12.69□□□□□ -0.38
NUP54-207ENST00000508583 NUTM2BA6NNL0 878 aaPredicted RBP12.69□□□□□ -0.38
NUP54-207ENST00000508583 NUTM2EB1AL46 878 aaPredicted RBP12.69□□□□□ -0.38
NUP54-207ENST00000508583 NUTM2AQ8IVF1 878 aaPredicted RBP12.69□□□□□ -0.38
NUP54-207ENST00000508583 CPSF1Q10570 1443 aaKnown RBP12.69□□□□□ -0.38
NUP54-207ENST00000508583 TTC21AQ8NDW8 1320 aa12.68□□□□□ -0.38
NUP54-207ENST00000508583 ANKRD36BQ8N2N9 1353 aa12.68□□□□□ -0.38
NUP54-207ENST00000508583 ABTB2Q8N961 1025 aa12.67□□□□□ -0.38
NUP54-207ENST00000508583 MARF1Q9Y4F3 1742 aaKnown RBP12.67□□□□□ -0.38
NUP54-207ENST00000508583 MON2Q7Z3U7 1717 aa12.66□□□□□ -0.38
NUP54-207ENST00000508583 CRYBG1Q9Y4K1 1723 aa12.66□□□□□ -0.38
NUP54-207ENST00000508583 EDC4Q6P2E9 1401 aaKnown RBP12.66□□□□□ -0.38
NUP54-207ENST00000508583 NLRP13Q86W25 1043 aa12.66□□□□□ -0.38
NUP54-207ENST00000508583 SLC12A5Q9H2X9 1139 aa12.66□□□□□ -0.38
NUP54-207ENST00000508583 NRKQ7Z2Y5 1582 aa12.65□□□□□ -0.38
NUP54-207ENST00000508583 PLEKHG5O94827 1062 aa12.65□□□□□ -0.38
NUP54-207ENST00000508583 A0A1W2PP64 1363 aa12.65□□□□□ -0.38
NUP54-207ENST00000508583 SSH2Q76I76 1423 aa12.64□□□□□ -0.39
NUP54-207ENST00000508583 POLR3GLQ9BT43 218 aa12.64□□□□□ -0.39
NUP54-207ENST00000508583 CD163L1Q9NR16 1453 aa12.64□□□□□ -0.39
NUP54-207ENST00000508583 TTC21BQ7Z4L5 1316 aa12.63□□□□□ -0.39
NUP54-207ENST00000508583 PHRF1Q9P1Y6 1649 aaKnown RBP12.63□□□□□ -0.39
NUP54-207ENST00000508583 ADAMTS2O95450 1211 aa12.63□□□□□ -0.39
NUP54-207ENST00000508583 ZNF772Q68DY9 489 aaPredicted RBP12.63□□□□□ -0.39
NUP54-207ENST00000508583 PIK3C2AO00443 1686 aa12.62□□□□□ -0.39
NUP54-207ENST00000508583 MYOM1P52179 1685 aa12.62□□□□□ -0.39
NUP54-207ENST00000508583 C1QBPQ07021 282 aaKnown RBP12.62□□□□□ -0.39
NUP54-207ENST00000508583 CABLES1Q8TDN4 633 aa12.62□□□□□ -0.39
NUP54-207ENST00000508583 DCAF8L1A6NGE4 600 aa12.61□□□□□ -0.39
NUP54-207ENST00000508583 NLRP6P59044 892 aa12.61□□□□□ -0.39
NUP54-207ENST00000508583 KCNH5Q8NCM2 988 aa12.61□□□□□ -0.39
NUP54-207ENST00000508583 NGLY1Q96IV0 654 aa12.61□□□□□ -0.39
NUP54-207ENST00000508583 C8orf37Q96NL8 207 aa12.61□□□□□ -0.39
NUP54-207ENST00000508583 RGS17Q9UGC6 210 aaPredicted RBP12.61□□□□□ -0.39
NUP54-207ENST00000508583 USP19O94966 1318 aa12.61□□□□□ -0.39
NUP54-207ENST00000508583 POTEHQ6S545 545 aa12.6□□□□□ -0.39
NUP54-207ENST00000508583 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.6□□□□□ -0.39
NUP54-207ENST00000508583 PLCH1Q4KWH8 1693 aa12.6□□□□□ -0.39
NUP54-207ENST00000508583 NUTM2GQ5VZR2 741 aa12.59□□□□□ -0.39
NUP54-207ENST00000508583 KIF7Q2M1P5 1343 aa12.59□□□□□ -0.39
NUP54-207ENST00000508583 USP31Q70CQ4 1352 aa12.58□□□□□ -0.4
NUP54-207ENST00000508583 USP54Q70EL1 1684 aa12.58□□□□□ -0.4
NUP54-207ENST00000508583 GCP02774 474 aa12.58□□□□□ -0.4
NUP54-207ENST00000508583 PRDM11Q9NQV5 511 aa12.58□□□□□ -0.4
NUP54-207ENST00000508583 AFF2P51816 1311 aa12.58□□□□□ -0.4
NUP54-207ENST00000508583 CGNL1Q0VF96 1302 aa12.58□□□□□ -0.4
NUP54-207ENST00000508583 SLIT3O75094 1523 aa12.57□□□□□ -0.4
NUP54-207ENST00000508583 CPDO75976 1380 aa12.57□□□□□ -0.4
NUP54-207ENST00000508583 COL14A1Q05707 1796 aaKnown RBP12.57□□□□□ -0.4
NUP54-207ENST00000508583 ILDR2Q71H61 639 aa12.57□□□□□ -0.4
NUP54-207ENST00000508583 FNBP4Q8N3X1 1017 aaPredicted RBP12.57□□□□□ -0.4
NUP54-207ENST00000508583 COG3Q96JB2 828 aa12.57□□□□□ -0.4
NUP54-207ENST00000508583 NWD2Q9ULI1 1742 aa12.57□□□□□ -0.4
NUP54-207ENST00000508583 CCDC7Q96M83 1385 aa12.56□□□□□ -0.4
NUP54-207ENST00000508583 NSD3Q9BZ95 1437 aa12.56□□□□□ -0.4
NUP54-207ENST00000508583 POTEAQ6S8J7 498 aa12.56□□□□□ -0.4
NUP54-207ENST00000508583 NRAPQ86VF7 1730 aa12.55□□□□□ -0.4
NUP54-207ENST00000508583 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.55□□□□□ -0.4
NUP54-207ENST00000508583 NME9Q86XW9 330 aa12.55□□□□□ -0.4
NUP54-207ENST00000508583 USP21Q9UK80 565 aa12.55□□□□□ -0.4
NUP54-207ENST00000508583 KIF20BQ96Q89 1820 aa12.55□□□□□ -0.4
NUP54-207ENST00000508583 NSD2O96028 1365 aa12.55□□□□□ -0.4
NUP54-207ENST00000508583 KIAA0232Q92628 1395 aa12.55□□□□□ -0.4
NUP54-207ENST00000508583 OVOS2A0A0J9YW53 1432 aa12.54□□□□□ -0.4
NUP54-207ENST00000508583 OVOS2Q6IE36 1432 aa12.54□□□□□ -0.4
NUP54-207ENST00000508583 SLIT2O94813 1529 aa12.54□□□□□ -0.4
NUP54-207ENST00000508583 ABCC6O95255 1503 aa12.54□□□□□ -0.4
NUP54-207ENST00000508583 C11orf95C9JLR9 678 aaPredicted RBP12.54□□□□□ -0.4
NUP54-207ENST00000508583 ZC3H6P61129 1189 aaKnown RBP12.54□□□□□ -0.4
NUP54-207ENST00000508583 UNC5CLQ8IV45 518 aa12.54□□□□□ -0.4
NUP54-207ENST00000508583 PANK3Q9H999 370 aa12.54□□□□□ -0.4
NUP54-207ENST00000508583 TRPC5Q9UL62 973 aaPredicted RBP12.54□□□□□ -0.4
NUP54-207ENST00000508583 KNSTRNQ9Y448 316 aa12.54□□□□□ -0.4
NUP54-207ENST00000508583 BCL9LQ86UU0 1499 aa12.53□□□□□ -0.4
NUP54-207ENST00000508583 FAM83GA6ND36 823 aa12.53□□□□□ -0.4
NUP54-207ENST00000508583 WASHC2AQ641Q2 1341 aa12.53□□□□□ -0.4
NUP54-207ENST00000508583 FYB1O15117 783 aa12.52□□□□□ -0.41
NUP54-207ENST00000508583 HOXD11P31277 338 aaPredicted RBP12.52□□□□□ -0.41
NUP54-207ENST00000508583 CARD14Q9BXL6 1004 aa12.52□□□□□ -0.41
NUP54-207ENST00000508583 AATKQ6ZMQ8 1374 aa12.52□□□□□ -0.41
NUP54-207ENST00000508583 NFAT5O94916 1531 aa12.52□□□□□ -0.41
NUP54-207ENST00000508583 RXRBP28702 533 aa12.51□□□□□ -0.41
NUP54-207ENST00000508583 QTRT2Q9H974 415 aaKnown RBP12.51□□□□□ -0.41
NUP54-207ENST00000508583 BTG4Q9NY30 223 aa12.51□□□□□ -0.41
NUP54-207ENST00000508583 SOX12O15370 315 aa12.5□□□□□ -0.41
NUP54-207ENST00000508583 EVA1CP58658 441 aa12.5□□□□□ -0.41
NUP54-207ENST00000508583 RBM6P78332 1123 aaKnown RBP12.5□□□□□ -0.41
NUP54-207ENST00000508583 ARHGEF25Q86VW2 580 aa12.5□□□□□ -0.41
NUP54-207ENST00000508583 GGNBP2Q9H3C7 697 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms