RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 HSP90AA1P07900 732 aaKnown RBP17.43■□□□□ 0.38
CCDC88A-211ENST00000471947 TRIM27P14373 513 aa17.42■□□□□ 0.38
CCDC88A-211ENST00000471947 KIDINS220Q9ULH0 1771 aa17.42■□□□□ 0.38
CCDC88A-211ENST00000471947 MLH3Q9UHC1 1453 aa17.42■□□□□ 0.38
CCDC88A-211ENST00000471947 PIK3C2GO75747 1445 aa17.41■□□□□ 0.38
CCDC88A-211ENST00000471947 ABCA9Q8IUA7 1624 aa17.41■□□□□ 0.38
CCDC88A-211ENST00000471947 NKTRP30414 1462 aaKnown RBP17.41■□□□□ 0.38
CCDC88A-211ENST00000471947 EFCAB6Q5THR3 1501 aa17.41■□□□□ 0.38
CCDC88A-211ENST00000471947 PNNQ9H307 717 aaKnown RBP17.41■□□□□ 0.38
CCDC88A-211ENST00000471947 PPRC1Q5VV67 1664 aaKnown RBP17.41■□□□□ 0.38
CCDC88A-211ENST00000471947 MADDQ8WXG6 1647 aa17.41■□□□□ 0.38
CCDC88A-211ENST00000471947 PSME1Q06323 249 aa17.41■□□□□ 0.38
CCDC88A-211ENST00000471947 ABCC3O15438 1527 aa17.4■□□□□ 0.38
CCDC88A-211ENST00000471947 SPHKAPQ2M3C7 1700 aa17.4■□□□□ 0.38
CCDC88A-211ENST00000471947 TWISTNBQ3B726 338 aaPredicted RBP17.39■□□□□ 0.38
CCDC88A-211ENST00000471947 RNF17Q9BXT8 1623 aaKnown RBP17.39■□□□□ 0.38
CCDC88A-211ENST00000471947 IPO8O15397 1037 aaKnown RBP17.39■□□□□ 0.37
CCDC88A-211ENST00000471947 SEC24BO95487 1268 aa17.39■□□□□ 0.37
CCDC88A-211ENST00000471947 TRIM35Q9UPQ4 493 aa17.39■□□□□ 0.37
CCDC88A-211ENST00000471947 TNRQ92752 1358 aa17.39■□□□□ 0.37
CCDC88A-211ENST00000471947 KCNA6P17658 529 aa17.39■□□□□ 0.37
CCDC88A-211ENST00000471947 WDR63Q8IWG1 891 aa17.38■□□□□ 0.37
CCDC88A-211ENST00000471947 NGEFQ8N5V2 710 aa17.38■□□□□ 0.37
CCDC88A-211ENST00000471947 TET3O43151 1660 aa17.38■□□□□ 0.37
CCDC88A-211ENST00000471947 BLMP54132 1417 aaPredicted RBP17.38■□□□□ 0.37
CCDC88A-211ENST00000471947 PPIP5K1Q6PFW1 1433 aa17.38■□□□□ 0.37
CCDC88A-211ENST00000471947 HAP1P54257 671 aaPredicted RBP17.37■□□□□ 0.37
CCDC88A-211ENST00000471947 ATF7IPQ6VMQ6 1270 aa17.37■□□□□ 0.37
CCDC88A-211ENST00000471947 HECW2Q9P2P5 1572 aa17.36■□□□□ 0.37
CCDC88A-211ENST00000471947 F6X3S4 739 aa17.36■□□□□ 0.37
CCDC88A-211ENST00000471947 C8orf58Q8NAV2 365 aa17.36■□□□□ 0.37
CCDC88A-211ENST00000471947 ABCA6Q8N139 1617 aa17.36■□□□□ 0.37
CCDC88A-211ENST00000471947 POLR3AO14802 1390 aaPredicted RBP17.36■□□□□ 0.37
CCDC88A-211ENST00000471947 ZNF521Q96K83 1311 aa17.36■□□□□ 0.37
CCDC88A-211ENST00000471947 TSPYL4Q9UJ04 414 aa17.36■□□□□ 0.37
CCDC88A-211ENST00000471947 MVPQ14764 893 aaKnown RBP17.35■□□□□ 0.37
CCDC88A-211ENST00000471947 ZC3H6P61129 1189 aaKnown RBP17.35■□□□□ 0.37
CCDC88A-211ENST00000471947 THEMISQ8N1K5 641 aaPredicted RBP17.35■□□□□ 0.37
CCDC88A-211ENST00000471947 NEO1Q92859 1461 aa17.35■□□□□ 0.37
CCDC88A-211ENST00000471947 PDE3AQ14432 1141 aa17.35■□□□□ 0.37
CCDC88A-211ENST00000471947 NFE2L2Q16236 605 aa17.35■□□□□ 0.37
CCDC88A-211ENST00000471947 FCHSD2O94868 740 aa17.34■□□□□ 0.37
CCDC88A-211ENST00000471947 MBIPQ9NS73 344 aa17.34■□□□□ 0.37
CCDC88A-211ENST00000471947 CSB-PGBD3P0DP91 1061 aa17.34■□□□□ 0.37
CCDC88A-211ENST00000471947 INO80Q9ULG1 1556 aaPredicted RBP17.34■□□□□ 0.37
CCDC88A-211ENST00000471947 PRR36Q9H6K5 1346 aa17.34■□□□□ 0.37
CCDC88A-211ENST00000471947 DDX17Q92841 729 aaKnown RBP17.34■□□□□ 0.37
CCDC88A-211ENST00000471947 MAP3K4Q9Y6R4 1608 aa17.33■□□□□ 0.37
CCDC88A-211ENST00000471947 KIF1BO60333 1816 aa17.33■□□□□ 0.37
CCDC88A-211ENST00000471947 DDRGK1Q96HY6 314 aa17.33■□□□□ 0.36
CCDC88A-211ENST00000471947 EIF4A2Q14240 407 aaKnown RBP17.33■□□□□ 0.36
CCDC88A-211ENST00000471947 GZF1Q9H116 711 aaPredicted RBP17.33■□□□□ 0.36
CCDC88A-211ENST00000471947 ZNF330Q9Y3S2 320 aaPredicted RBP17.33■□□□□ 0.36
CCDC88A-211ENST00000471947 ANXA1P04083 346 aa17.32■□□□□ 0.36
CCDC88A-211ENST00000471947 SLC4A2P04920 1241 aa17.32■□□□□ 0.36
CCDC88A-211ENST00000471947 GNAI1P63096 354 aa17.31■□□□□ 0.36
CCDC88A-211ENST00000471947 DDX19BQ9UMR2 479 aa17.31■□□□□ 0.36
CCDC88A-211ENST00000471947 TTC21BQ7Z4L5 1316 aa17.31■□□□□ 0.36
CCDC88A-211ENST00000471947 ZMYM4Q5VZL5 1548 aa17.31■□□□□ 0.36
CCDC88A-211ENST00000471947 MS4A1P11836 297 aa17.31■□□□□ 0.36
CCDC88A-211ENST00000471947 NOL8Q76FK4 1167 aaKnown RBP17.31■□□□□ 0.36
CCDC88A-211ENST00000471947 RSPH6AQ9H0K4 717 aa17.3■□□□□ 0.36
CCDC88A-211ENST00000471947 USP35Q9P2H5 1018 aa17.3■□□□□ 0.36
CCDC88A-211ENST00000471947 HSPA2P54652 639 aa17.29■□□□□ 0.36
CCDC88A-211ENST00000471947 FKBP5Q13451 457 aaPredicted RBP17.29■□□□□ 0.36
CCDC88A-211ENST00000471947 CCDC9Q9Y3X0 531 aaKnown RBP17.29■□□□□ 0.36
CCDC88A-211ENST00000471947 FRMPD1Q5SYB0 1578 aa17.29■□□□□ 0.36
CCDC88A-211ENST00000471947 KDM5AP29375 1690 aaKnown RBP17.28■□□□□ 0.36
CCDC88A-211ENST00000471947 SMARCA5O60264 1052 aaPredicted RBP17.28■□□□□ 0.36
CCDC88A-211ENST00000471947 PROSER2Q86WR7 435 aaPredicted RBP17.28■□□□□ 0.36
CCDC88A-211ENST00000471947 MYOM2P54296 1465 aa17.28■□□□□ 0.36
CCDC88A-211ENST00000471947 ROBO2Q9HCK4 1378 aa17.28■□□□□ 0.36
CCDC88A-211ENST00000471947 LRRC59Q96AG4 307 aaKnown RBP17.28■□□□□ 0.36
CCDC88A-211ENST00000471947 MROH2AA6NES4 1674 aa17.27■□□□□ 0.36
CCDC88A-211ENST00000471947 ZNF692Q9BU19 519 aaPredicted RBP17.27■□□□□ 0.36
CCDC88A-211ENST00000471947 C8orf34Q49A92 452 aa17.26■□□□□ 0.35
CCDC88A-211ENST00000471947 TSHZ3Q63HK5 1081 aa17.26■□□□□ 0.35
CCDC88A-211ENST00000471947 STK31Q9BXU1 1019 aa17.26■□□□□ 0.35
CCDC88A-211ENST00000471947 ARAP3Q8WWN8 1544 aa17.26■□□□□ 0.35
CCDC88A-211ENST00000471947 CABLES1Q8TDN4 633 aa17.26■□□□□ 0.35
CCDC88A-211ENST00000471947 AIMP1Q12904 312 aaKnown RBP17.25■□□□□ 0.35
CCDC88A-211ENST00000471947 MROH1Q8NDA8 1641 aa17.25■□□□□ 0.35
CCDC88A-211ENST00000471947 CALD1Q05682 793 aaKnown RBP17.25■□□□□ 0.35
CCDC88A-211ENST00000471947 PLEKHF1Q96S99 279 aa17.25■□□□□ 0.35
CCDC88A-211ENST00000471947 ORAI2Q96SN7 254 aa17.25■□□□□ 0.35
CCDC88A-211ENST00000471947 MAP3K19Q56UN5 1328 aa17.25■□□□□ 0.35
CCDC88A-211ENST00000471947 IL13P35225 146 aa17.25■□□□□ 0.35
CCDC88A-211ENST00000471947 ABCC11Q96J66 1382 aa17.25■□□□□ 0.35
CCDC88A-211ENST00000471947 ANKLE2Q86XL3 938 aa17.24■□□□□ 0.35
CCDC88A-211ENST00000471947 DIP2CQ9Y2E4 1556 aa17.24■□□□□ 0.35
CCDC88A-211ENST00000471947 TRMT2AQ8IZ69 625 aaKnown RBP17.24■□□□□ 0.35
CCDC88A-211ENST00000471947 NPC1L1Q9UHC9 1359 aa17.24■□□□□ 0.35
CCDC88A-211ENST00000471947 BECN1Q14457 450 aa17.24■□□□□ 0.35
CCDC88A-211ENST00000471947 FOXD4L5Q5VV16 416 aaPredicted RBP17.24■□□□□ 0.35
CCDC88A-211ENST00000471947 FOXD4L4Q8WXT5 416 aaPredicted RBP17.24■□□□□ 0.35
CCDC88A-211ENST00000471947 LMOD3Q0VAK6 560 aa17.23■□□□□ 0.35
CCDC88A-211ENST00000471947 NLRP2Q9NX02 1062 aa17.23■□□□□ 0.35
CCDC88A-211ENST00000471947 FRAT2O75474 233 aaPredicted RBP17.23■□□□□ 0.35
CCDC88A-211ENST00000471947 KIF16BQ96L93 1317 aa17.23■□□□□ 0.35
CCDC88A-211ENST00000471947 MTHFSDQ2M296 383 aaKnown RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms