RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 TULP1O00294 542 aaPredicted RBP13.2□□□□□ -0.3
CHD3-208ENST00000470531 TWISTNBQ3B726 338 aaPredicted RBP13.2□□□□□ -0.3
CHD3-208ENST00000470531 GDPD2Q9HCC8 539 aa13.2□□□□□ -0.3
CHD3-208ENST00000470531 CCDC27Q2M243 656 aa13.19□□□□□ -0.3
CHD3-208ENST00000470531 MCM10Q7L590 875 aa13.19□□□□□ -0.3
CHD3-208ENST00000470531 TSPYL6Q8N831 410 aa13.19□□□□□ -0.3
CHD3-208ENST00000470531 FAM135AQ9P2D6 1515 aa13.19□□□□□ -0.3
CHD3-208ENST00000470531 F6X3S4 739 aa13.19□□□□□ -0.3
CHD3-208ENST00000470531 NEK4P51957 841 aa13.19□□□□□ -0.3
CHD3-208ENST00000470531 CYB5RLQ6IPT4 315 aa13.19□□□□□ -0.3
CHD3-208ENST00000470531 NCKAP5LQ9HCH0 1330 aa13.19□□□□□ -0.3
CHD3-208ENST00000470531 NGEFQ8N5V2 710 aa13.18□□□□□ -0.3
CHD3-208ENST00000470531 MRE11P49959 708 aa13.18□□□□□ -0.3
CHD3-208ENST00000470531 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.18□□□□□ -0.3
CHD3-208ENST00000470531 EXOC6BQ9Y2D4 811 aa13.18□□□□□ -0.3
CHD3-208ENST00000470531 ADAMTS12P58397 1594 aa13.18□□□□□ -0.3
CHD3-208ENST00000470531 PBRM1Q86U86 1689 aa13.18□□□□□ -0.3
CHD3-208ENST00000470531 MRC2Q9UBG0 1479 aa13.18□□□□□ -0.3
CHD3-208ENST00000470531 FOSBP53539 338 aa13.18□□□□□ -0.3
CHD3-208ENST00000470531 UPF3BQ9BZI7 483 aaKnown RBP13.18□□□□□ -0.3
CHD3-208ENST00000470531 RBM27Q9P2N5 1060 aaKnown RBP13.18□□□□□ -0.3
CHD3-208ENST00000470531 ERBB4Q15303 1308 aa13.17□□□□□ -0.3
CHD3-208ENST00000470531 ESPNB1AK53 854 aa13.17□□□□□ -0.3
CHD3-208ENST00000470531 FBXO31Q5XUX0 539 aaPredicted RBP13.17□□□□□ -0.3
CHD3-208ENST00000470531 CDK19Q9BWU1 502 aa13.17□□□□□ -0.3
CHD3-208ENST00000470531 CEP170Q5SW79 1584 aa13.17□□□□□ -0.3
CHD3-208ENST00000470531 CCDC141Q6ZP82 1450 aa13.17□□□□□ -0.3
CHD3-208ENST00000470531 SULT6B1Q6IMI4 303 aa13.17□□□□□ -0.3
CHD3-208ENST00000470531 FKBP5Q13451 457 aaPredicted RBP13.17□□□□□ -0.3
CHD3-208ENST00000470531 TAF7LQ5H9L4 462 aa13.17□□□□□ -0.3
CHD3-208ENST00000470531 TRMT2AQ8IZ69 625 aaKnown RBP13.17□□□□□ -0.3
CHD3-208ENST00000470531 CHMP4BQ9H444 224 aaKnown RBP13.17□□□□□ -0.3
CHD3-208ENST00000470531 TARBP1Q13395 1621 aaKnown RBP13.17□□□□□ -0.3
CHD3-208ENST00000470531 FBXW7Q969H0 707 aa13.16□□□□□ -0.3
CHD3-208ENST00000470531 TRPM1Q7Z4N2 1603 aa13.16□□□□□ -0.3
CHD3-208ENST00000470531 COG3Q96JB2 828 aa13.16□□□□□ -0.3
CHD3-208ENST00000470531 PLA2R1Q13018 1463 aa13.16□□□□□ -0.3
CHD3-208ENST00000470531 ST18O60284 1047 aa13.16□□□□□ -0.3
CHD3-208ENST00000470531 WDR63Q8IWG1 891 aa13.16□□□□□ -0.3
CHD3-208ENST00000470531 IL1RAPL2Q9NP60 686 aa13.16□□□□□ -0.3
CHD3-208ENST00000470531 CDK11BP21127 795 aaKnown RBP13.15□□□□□ -0.3
CHD3-208ENST00000470531 AMPHP49418 695 aa13.15□□□□□ -0.3
CHD3-208ENST00000470531 NME9Q86XW9 330 aa13.15□□□□□ -0.3
CHD3-208ENST00000470531 DRC7Q8IY82 874 aa13.15□□□□□ -0.3
CHD3-208ENST00000470531 RBM33Q96EV2 1170 aaKnown RBP13.15□□□□□ -0.3
CHD3-208ENST00000470531 KIF16BQ96L93 1317 aa13.15□□□□□ -0.3
CHD3-208ENST00000470531 ITSN2Q9NZM3 1697 aa13.15□□□□□ -0.3
CHD3-208ENST00000470531 RRP9O43818 475 aaKnown RBP13.15□□□□□ -0.3
CHD3-208ENST00000470531 SLC4A2P04920 1241 aa13.15□□□□□ -0.3
CHD3-208ENST00000470531 CLCN1P35523 988 aa13.15□□□□□ -0.3
CHD3-208ENST00000470531 WDR7Q9Y4E6 1490 aa13.15□□□□□ -0.31
CHD3-208ENST00000470531 PHACTR3Q96KR7 559 aa13.14□□□□□ -0.31
CHD3-208ENST00000470531 STK31Q9BXU1 1019 aa13.14□□□□□ -0.31
CHD3-208ENST00000470531 TBC1D9Q6ZT07 1266 aa13.14□□□□□ -0.31
CHD3-208ENST00000470531 NGDNQ8NEJ9 315 aaKnown RBP13.14□□□□□ -0.31
CHD3-208ENST00000470531 ZNF330Q9Y3S2 320 aaPredicted RBP13.14□□□□□ -0.31
CHD3-208ENST00000470531 OTUD7AQ8TE49 926 aaPredicted RBP13.14□□□□□ -0.31
CHD3-208ENST00000470531 XPCQ01831 940 aaPredicted RBP13.13□□□□□ -0.31
CHD3-208ENST00000470531 GAS2L3Q86XJ1 694 aa13.13□□□□□ -0.31
CHD3-208ENST00000470531 FSD2A1L4K1 749 aa13.13□□□□□ -0.31
CHD3-208ENST00000470531 K7ELQ4 463 aaPredicted RBP13.12□□□□□ -0.31
CHD3-208ENST00000470531 IDI1Q13907 227 aa13.12□□□□□ -0.31
CHD3-208ENST00000470531 KIAA1211Q6ZU35 1233 aa13.12□□□□□ -0.31
CHD3-208ENST00000470531 NOS1P29475 1434 aa13.12□□□□□ -0.31
CHD3-208ENST00000470531 SYCE3A1L190 88 aa13.12□□□□□ -0.31
CHD3-208ENST00000470531 CDC45O75419 566 aa13.12□□□□□ -0.31
CHD3-208ENST00000470531 IFT140Q96RY7 1462 aa13.12□□□□□ -0.31
CHD3-208ENST00000470531 GOLGA6L4A6NEF3 574 aa13.12□□□□□ -0.31
CHD3-208ENST00000470531 GAS2L2Q8NHY3 880 aa13.12□□□□□ -0.31
CHD3-208ENST00000470531 TSPYL4Q9UJ04 414 aa13.12□□□□□ -0.31
CHD3-208ENST00000470531 NLRP1Q9C000 1473 aa13.12□□□□□ -0.31
CHD3-208ENST00000470531 SYCP2Q9BX26 1530 aa13.12□□□□□ -0.31
CHD3-208ENST00000470531 CFAP65Q6ZU64 1925 aaKnown RBP13.12□□□□□ -0.31
CHD3-208ENST00000470531 TRAPPC8Q9Y2L5 1435 aa13.11□□□□□ -0.31
CHD3-208ENST00000470531 CROCC2H7BZ55 1655 aa13.11□□□□□ -0.31
CHD3-208ENST00000470531 MCCP23508 829 aa13.11□□□□□ -0.31
CHD3-208ENST00000470531 PPFIA3O75145 1194 aa13.1□□□□□ -0.31
CHD3-208ENST00000470531 NCBP3Q53F19 620 aaKnown RBP13.1□□□□□ -0.31
CHD3-208ENST00000470531 VPS37CA5D8V6 355 aaPredicted RBP13.1□□□□□ -0.31
CHD3-208ENST00000470531 GNAI1P63096 354 aa13.1□□□□□ -0.31
CHD3-208ENST00000470531 C8orf58Q8NAV2 365 aa13.1□□□□□ -0.31
CHD3-208ENST00000470531 CD2BP2O95400 341 aaKnown RBP13.09□□□□□ -0.31
CHD3-208ENST00000470531 PRDM15P57071 1507 aaPredicted RBP13.09□□□□□ -0.31
CHD3-208ENST00000470531 CDC42BPAQ5VT25 1732 aa13.09□□□□□ -0.31
CHD3-208ENST00000470531 ZGPATQ8N5A5 531 aaKnown RBP13.09□□□□□ -0.31
CHD3-208ENST00000470531 FYB1O15117 783 aa13.09□□□□□ -0.31
CHD3-208ENST00000470531 FIBPO43427 364 aa13.09□□□□□ -0.31
CHD3-208ENST00000470531 AEBP1Q8IUX7 1158 aa13.09□□□□□ -0.31
CHD3-208ENST00000470531 PRDM10Q9NQV6 1147 aa13.09□□□□□ -0.31
CHD3-208ENST00000470531 ASXL1Q8IXJ9 1541 aa13.09□□□□□ -0.31
CHD3-208ENST00000470531 KDM4AO75164 1064 aa13.08□□□□□ -0.32
CHD3-208ENST00000470531 PLCD3Q8N3E9 789 aa13.08□□□□□ -0.32
CHD3-208ENST00000470531 ZNF830Q96NB3 372 aaPredicted RBP13.08□□□□□ -0.32
CHD3-208ENST00000470531 ADCY10Q96PN6 1610 aa13.08□□□□□ -0.32
CHD3-208ENST00000470531 FAM177BA6PVY3 158 aa13.08□□□□□ -0.32
CHD3-208ENST00000470531 SLC26A8Q96RN1 970 aa13.08□□□□□ -0.32
CHD3-208ENST00000470531 EIF4G3O43432 1585 aaKnown RBP13.08□□□□□ -0.32
CHD3-208ENST00000470531 AIMP1Q12904 312 aaKnown RBP13.08□□□□□ -0.32
CHD3-208ENST00000470531 INTS3Q68E01 1043 aaKnown RBP13.08□□□□□ -0.32
CHD3-208ENST00000470531 SPC24Q8NBT2 197 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms