RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 FBLN1P23142 703 aa11.54□□□□□ -0.56
SYNE1-217ENST00000466159 TMPOP42166 694 aaKnown RBP11.54□□□□□ -0.56
SYNE1-217ENST00000466159 FAM161AQ3B820 660 aa11.54□□□□□ -0.56
SYNE1-217ENST00000466159 NCBP3Q53F19 620 aaKnown RBP11.54□□□□□ -0.56
SYNE1-217ENST00000466159 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.54□□□□□ -0.56
SYNE1-217ENST00000466159 MED14O60244 1454 aa11.54□□□□□ -0.56
SYNE1-217ENST00000466159 TSR2Q969E8 191 aaKnown RBP11.54□□□□□ -0.56
SYNE1-217ENST00000466159 TRIM35Q9UPQ4 493 aa11.53□□□□□ -0.56
SYNE1-217ENST00000466159 DIAPH1O60610 1272 aaKnown RBP11.52□□□□□ -0.57
SYNE1-217ENST00000466159 MAPK8IP3Q9UPT6 1336 aa11.52□□□□□ -0.57
SYNE1-217ENST00000466159 SETD1AO15047 1707 aaKnown RBP11.52□□□□□ -0.57
SYNE1-217ENST00000466159 KIF20BQ96Q89 1820 aa11.51□□□□□ -0.57
SYNE1-217ENST00000466159 PPM1GO15355 546 aaPredicted RBP11.51□□□□□ -0.57
SYNE1-217ENST00000466159 DLC1Q96QB1 1528 aa11.51□□□□□ -0.57
SYNE1-217ENST00000466159 PNPLA6Q8IY17 1366 aa11.51□□□□□ -0.57
SYNE1-217ENST00000466159 EXOSC9Q06265 439 aaKnown RBP11.51□□□□□ -0.57
SYNE1-217ENST00000466159 PCDHB15Q9Y5E8 787 aa11.51□□□□□ -0.57
SYNE1-217ENST00000466159 METP08581 1390 aa11.5□□□□□ -0.57
SYNE1-217ENST00000466159 RIPK4P57078 832 aa11.5□□□□□ -0.57
SYNE1-217ENST00000466159 ZMYM3Q14202 1370 aa11.5□□□□□ -0.57
SYNE1-217ENST00000466159 TXNDC2Q86VQ3 553 aa11.5□□□□□ -0.57
SYNE1-217ENST00000466159 LAS1LQ9Y4W2 734 aaKnown RBP11.5□□□□□ -0.57
SYNE1-217ENST00000466159 ESF1Q9H501 851 aaKnown RBP11.49□□□□□ -0.57
SYNE1-217ENST00000466159 POLKQ9UBT6 870 aa11.49□□□□□ -0.57
SYNE1-217ENST00000466159 NRXN3Q9Y4C0 1643 aa11.49□□□□□ -0.57
SYNE1-217ENST00000466159 DDRGK1Q96HY6 314 aa11.49□□□□□ -0.57
SYNE1-217ENST00000466159 WASLO00401 505 aaPredicted RBP11.48□□□□□ -0.57
SYNE1-217ENST00000466159 NCKAP5LQ9HCH0 1330 aa11.48□□□□□ -0.57
SYNE1-217ENST00000466159 ATP7BP35670 1465 aa11.48□□□□□ -0.57
SYNE1-217ENST00000466159 ZKSCAN2Q63HK3 967 aa11.48□□□□□ -0.57
SYNE1-217ENST00000466159 SMC4Q9NTJ3 1288 aa11.48□□□□□ -0.57
SYNE1-217ENST00000466159 MAP2P11137 1827 aaKnown RBP11.47□□□□□ -0.57
SYNE1-217ENST00000466159 SLC4A3P48751 1232 aa11.47□□□□□ -0.57
SYNE1-217ENST00000466159 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.47□□□□□ -0.57
SYNE1-217ENST00000466159 PMFBP1Q8TBY8 1022 aa11.47□□□□□ -0.57
SYNE1-217ENST00000466159 ZRANB1Q9UGI0 708 aa11.47□□□□□ -0.57
SYNE1-217ENST00000466159 KIF13AQ9H1H9 1805 aa11.47□□□□□ -0.57
SYNE1-217ENST00000466159 CT47B1P0C2W7 299 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-217ENST00000466159 DEKP35659 375 aaKnown RBP11.47□□□□□ -0.57
SYNE1-217ENST00000466159 AAMPQ13685 434 aa11.47□□□□□ -0.57
SYNE1-217ENST00000466159 MVPQ14764 893 aaKnown RBP11.47□□□□□ -0.57
SYNE1-217ENST00000466159 NME9Q86XW9 330 aa11.47□□□□□ -0.57
SYNE1-217ENST00000466159 SSH1Q8WYL5 1049 aa11.47□□□□□ -0.57
SYNE1-217ENST00000466159 PPIP5K1Q6PFW1 1433 aa11.46□□□□□ -0.57
SYNE1-217ENST00000466159 FCHSD2O94868 740 aa11.46□□□□□ -0.57
SYNE1-217ENST00000466159 PRKAR2BP31323 418 aa11.46□□□□□ -0.57
SYNE1-217ENST00000466159 FTSJ3Q8IY81 847 aaKnown RBP11.46□□□□□ -0.57
SYNE1-217ENST00000466159 DZIP1LQ8IYY4 767 aaKnown RBP11.46□□□□□ -0.57
SYNE1-217ENST00000466159 RSPH6AQ9H0K4 717 aa11.46□□□□□ -0.58
SYNE1-217ENST00000466159 PNNQ9H307 717 aaKnown RBP11.46□□□□□ -0.58
SYNE1-217ENST00000466159 EMILIN1Q9Y6C2 1016 aa11.46□□□□□ -0.58
SYNE1-217ENST00000466159 CPSF1Q10570 1443 aaKnown RBP11.46□□□□□ -0.58
SYNE1-217ENST00000466159 IL16Q14005 1332 aa11.46□□□□□ -0.58
SYNE1-217ENST00000466159 HMOX1P09601 288 aa11.45□□□□□ -0.58
SYNE1-217ENST00000466159 RTL5Q5HYW3 569 aaPredicted RBP11.45□□□□□ -0.58
SYNE1-217ENST00000466159 NUDT16Q96DE0 195 aaKnown RBP11.45□□□□□ -0.58
SYNE1-217ENST00000466159 LRRC7Q96NW7 1537 aa11.45□□□□□ -0.58
SYNE1-217ENST00000466159 TRIM27P14373 513 aa11.45□□□□□ -0.58
SYNE1-217ENST00000466159 PHACTR3Q96KR7 559 aa11.44□□□□□ -0.58
SYNE1-217ENST00000466159 NOB1Q9ULX3 412 aaKnown RBP11.44□□□□□ -0.58
SYNE1-217ENST00000466159 PDZRN3Q9UPQ7 1066 aa11.44□□□□□ -0.58
SYNE1-217ENST00000466159 EDC4Q6P2E9 1401 aaKnown RBP11.44□□□□□ -0.58
SYNE1-217ENST00000466159 CDC42BPGQ6DT37 1551 aa11.44□□□□□ -0.58
SYNE1-217ENST00000466159 FAM135BQ49AJ0 1406 aa11.43□□□□□ -0.58
SYNE1-217ENST00000466159 SEC24BO95487 1268 aa11.43□□□□□ -0.58
SYNE1-217ENST00000466159 RWDD1Q9H446 243 aaPredicted RBP11.43□□□□□ -0.58
SYNE1-217ENST00000466159 TNRQ92752 1358 aa11.43□□□□□ -0.58
SYNE1-217ENST00000466159 ATF7IPQ6VMQ6 1270 aa11.43□□□□□ -0.58
SYNE1-217ENST00000466159 CCDC61Q9Y6R9 512 aa11.43□□□□□ -0.58
SYNE1-217ENST00000466159 VIRMAQ69YN4 1812 aaKnown RBP11.43□□□□□ -0.58
SYNE1-217ENST00000466159 NEFMP07197 916 aa11.42□□□□□ -0.58
SYNE1-217ENST00000466159 HDGFP51858 240 aaKnown RBP11.42□□□□□ -0.58
SYNE1-217ENST00000466159 CPS1P31327 1500 aa11.42□□□□□ -0.58
SYNE1-217ENST00000466159 IL13P35225 146 aa11.42□□□□□ -0.58
SYNE1-217ENST00000466159 RRS1Q15050 365 aaKnown RBP11.42□□□□□ -0.58
SYNE1-217ENST00000466159 ITPRIPQ8IWB1 547 aa11.42□□□□□ -0.58
SYNE1-217ENST00000466159 THUMPD2Q9BTF0 503 aaKnown RBP11.42□□□□□ -0.58
SYNE1-217ENST00000466159 USP19O94966 1318 aa11.42□□□□□ -0.58
SYNE1-217ENST00000466159 DAXXQ9UER7 740 aaPredicted RBP11.41□□□□□ -0.58
SYNE1-217ENST00000466159 NFE2L2Q16236 605 aa11.41□□□□□ -0.58
SYNE1-217ENST00000466159 SIRT1Q96EB6 747 aa11.41□□□□□ -0.58
SYNE1-217ENST00000466159 COG3Q96JB2 828 aa11.41□□□□□ -0.58
SYNE1-217ENST00000466159 PRR36Q9H6K5 1346 aa11.41□□□□□ -0.58
SYNE1-217ENST00000466159 TMEM2Q9UHN6 1383 aa11.41□□□□□ -0.58
SYNE1-217ENST00000466159 TECPR2O15040 1411 aa11.41□□□□□ -0.58
SYNE1-217ENST00000466159 TMEM57Q8N5G2 664 aa11.4□□□□□ -0.58
SYNE1-217ENST00000466159 KNDC1Q76NI1 1749 aa11.4□□□□□ -0.58
SYNE1-217ENST00000466159 DDX19BQ9UMR2 479 aa11.4□□□□□ -0.58
SYNE1-217ENST00000466159 ROBO2Q9HCK4 1378 aa11.4□□□□□ -0.58
SYNE1-217ENST00000466159 UBR1Q8IWV7 1749 aa11.39□□□□□ -0.59
SYNE1-217ENST00000466159 MON2Q7Z3U7 1717 aa11.39□□□□□ -0.59
SYNE1-217ENST00000466159 AATKQ6ZMQ8 1374 aa11.39□□□□□ -0.59
SYNE1-217ENST00000466159 NUTM2FA1L443 756 aa11.39□□□□□ -0.59
SYNE1-217ENST00000466159 CDK12Q9NYV4 1490 aaPredicted RBP11.39□□□□□ -0.59
SYNE1-217ENST00000466159 LTKP29376 864 aa11.39□□□□□ -0.59
SYNE1-217ENST00000466159 ADAMTS13Q76LX8 1427 aa11.38□□□□□ -0.59
SYNE1-217ENST00000466159 KIF16BQ96L93 1317 aa11.38□□□□□ -0.59
SYNE1-217ENST00000466159 CEBPAP49715 358 aaPredicted RBP11.38□□□□□ -0.59
SYNE1-217ENST00000466159 ALDH1L2Q3SY69 923 aa11.38□□□□□ -0.59
SYNE1-217ENST00000466159 AKAP12Q02952 1782 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms