RNA–Protein interactions for RNA: ENST00000462030.5

HPS3-204, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 2

Gene HPS3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-204ENST00000462030 TMEM57Q8N5G2 664 aa23.28■■□□□ 1.32
HPS3-204ENST00000462030 TRAK2O60296 914 aa23.28■■□□□ 1.32
HPS3-204ENST00000462030 SAFB2Q14151 953 aaKnown RBP eCLIP23.27■■□□□ 1.32
HPS3-204ENST00000462030 ZNF692Q9BU19 519 aaPredicted RBP23.27■■□□□ 1.32
HPS3-204ENST00000462030 GGT6Q6P531 493 aa23.26■■□□□ 1.31
HPS3-204ENST00000462030 HSCBQ8IWL3 235 aa23.26■■□□□ 1.31
HPS3-204ENST00000462030 COL3A1P02461 1466 aaPredicted RBP23.26■■□□□ 1.31
HPS3-204ENST00000462030 GGNBP2Q9H3C7 697 aa23.25■■□□□ 1.31
HPS3-204ENST00000462030 A0A1W2PP64 1363 aa23.25■■□□□ 1.31
HPS3-204ENST00000462030 PUS7Q96PZ0 661 aaKnown RBP23.25■■□□□ 1.31
HPS3-204ENST00000462030 RPGRIP1LQ68CZ1 1315 aa23.24■■□□□ 1.31
HPS3-204ENST00000462030 ZBTB40Q9NUA8 1239 aa23.24■■□□□ 1.31
HPS3-204ENST00000462030 CAMSAP1Q5T5Y3 1602 aa23.24■■□□□ 1.31
HPS3-204ENST00000462030 FRMPD1Q5SYB0 1578 aa23.23■■□□□ 1.31
HPS3-204ENST00000462030 ABCC11Q96J66 1382 aa23.23■■□□□ 1.31
HPS3-204ENST00000462030 NCOA3Q9Y6Q9 1424 aa23.22■■□□□ 1.31
HPS3-204ENST00000462030 HECW2Q9P2P5 1572 aa23.21■■□□□ 1.31
HPS3-204ENST00000462030 LNPKQ9C0E8 428 aa23.21■■□□□ 1.31
HPS3-204ENST00000462030 RIPK4P57078 832 aa23.2■■□□□ 1.3
HPS3-204ENST00000462030 SIGLEC1Q9BZZ2 1709 aa23.2■■□□□ 1.3
HPS3-204ENST00000462030 ASXL2Q76L83 1435 aa23.2■■□□□ 1.3
HPS3-204ENST00000462030 DDIT3P35638 169 aa23.2■■□□□ 1.3
HPS3-204ENST00000462030 UBE2Q2Q8WVN8 375 aa23.2■■□□□ 1.3
HPS3-204ENST00000462030 IL16Q14005 1332 aa23.19■■□□□ 1.3
HPS3-204ENST00000462030 RBM25P49756 843 aaKnown RBP23.19■■□□□ 1.3
HPS3-204ENST00000462030 NUCB1Q02818 461 aa23.19■■□□□ 1.3
HPS3-204ENST00000462030 SENP3Q9H4L4 574 aaPredicted RBP23.19■■□□□ 1.3
HPS3-204ENST00000462030 NEXMIFQ5QGS0 1516 aa23.19■■□□□ 1.3
HPS3-204ENST00000462030 KIF16BQ96L93 1317 aa23.18■■□□□ 1.3
HPS3-204ENST00000462030 DDX11L8A8MPP1 907 aa23.18■■□□□ 1.3
HPS3-204ENST00000462030 ABCC3O15438 1527 aa23.18■■□□□ 1.3
HPS3-204ENST00000462030 SRPK2P78362 688 aaKnown RBP23.17■■□□□ 1.3
HPS3-204ENST00000462030 MRE11P49959 708 aa23.16■■□□□ 1.3
HPS3-204ENST00000462030 ANKRD26Q9UPS8 1709 aa23.15■■□□□ 1.3
HPS3-204ENST00000462030 VGFO15240 615 aaPredicted RBP23.15■■□□□ 1.3
HPS3-204ENST00000462030 CHD1LQ86WJ1 897 aa23.15■■□□□ 1.3
HPS3-204ENST00000462030 SNX21Q969T3 373 aa23.15■■□□□ 1.3
HPS3-204ENST00000462030 STK26Q9P289 416 aa23.15■■□□□ 1.3
HPS3-204ENST00000462030 FYB1O15117 783 aa23.15■■□□□ 1.3
HPS3-204ENST00000462030 IPO8O15397 1037 aaKnown RBP23.15■■□□□ 1.3
HPS3-204ENST00000462030 PIK3C2BO00750 1634 aa23.14■■□□□ 1.3
HPS3-204ENST00000462030 GRPEL1Q9HAV7 217 aa23.14■■□□□ 1.29
HPS3-204ENST00000462030 CFAP74Q9C0B2 1584 aa23.14■■□□□ 1.29
HPS3-204ENST00000462030 TNPO1Q92973 898 aaKnown RBP23.14■■□□□ 1.29
HPS3-204ENST00000462030 CLCN1P35523 988 aa23.13■■□□□ 1.29
HPS3-204ENST00000462030 POGZQ7Z3K3 1410 aa23.12■■□□□ 1.29
HPS3-204ENST00000462030 DIAPH1O60610 1272 aaKnown RBP23.11■■□□□ 1.29
HPS3-204ENST00000462030 ALDH1L2Q3SY69 923 aa23.11■■□□□ 1.29
HPS3-204ENST00000462030 KIF2CQ99661 725 aa23.11■■□□□ 1.29
HPS3-204ENST00000462030 CD163L1Q9NR16 1453 aa23.11■■□□□ 1.29
HPS3-204ENST00000462030 HSP90AB1P08238 724 aaKnown RBP23.1■■□□□ 1.29
HPS3-204ENST00000462030 PNNQ9H307 717 aaKnown RBP23.1■■□□□ 1.29
HPS3-204ENST00000462030 MED14O60244 1454 aa23.1■■□□□ 1.29
HPS3-204ENST00000462030 BMP2KLQ5H9B9 411 aa23.09■■□□□ 1.29
HPS3-204ENST00000462030 LRRC7Q96NW7 1537 aa23.09■■□□□ 1.29
HPS3-204ENST00000462030 PPIP5K1Q6PFW1 1433 aa23.09■■□□□ 1.29
HPS3-204ENST00000462030 MINK1Q8N4C8 1332 aaPredicted RBP23.09■■□□□ 1.29
HPS3-204ENST00000462030 CD2BP2O95400 341 aaKnown RBP23.09■■□□□ 1.29
HPS3-204ENST00000462030 C1orf115Q9H7X2 142 aa23.09■■□□□ 1.29
HPS3-204ENST00000462030 MLH3Q9UHC1 1453 aa23.08■■□□□ 1.29
HPS3-204ENST00000462030 ANKRD45Q5TZF3 282 aa23.08■■□□□ 1.29
HPS3-204ENST00000462030 NAP1L5Q96NT1 182 aaPredicted RBP23.08■■□□□ 1.29
HPS3-204ENST00000462030 FOXD4L1Q9NU39 408 aa23.07■■□□□ 1.28
HPS3-204ENST00000462030 RAB3GAP1Q15042 981 aa23.07■■□□□ 1.28
HPS3-204ENST00000462030 TERF2IPQ9NYB0 399 aa23.07■■□□□ 1.28
HPS3-204ENST00000462030 CIZ1Q9ULV3 898 aaPredicted RBP23.07■■□□□ 1.28
HPS3-204ENST00000462030 GAS2L3Q86XJ1 694 aa23.06■■□□□ 1.28
HPS3-204ENST00000462030 PNPLA6Q8IY17 1366 aa23.06■■□□□ 1.28
HPS3-204ENST00000462030 ATAD2Q6PL18 1390 aa23.06■■□□□ 1.28
HPS3-204ENST00000462030 PTPRMP28827 1452 aa23.06■■□□□ 1.28
HPS3-204ENST00000462030 ZBTB7BO15156 539 aaPredicted RBP23.05■■□□□ 1.28
HPS3-204ENST00000462030 GBP4Q96PP9 640 aa23.04■■□□□ 1.28
HPS3-204ENST00000462030 PRKAR2BP31323 418 aa23.04■■□□□ 1.28
HPS3-204ENST00000462030 IDI1Q13907 227 aa23.04■■□□□ 1.28
HPS3-204ENST00000462030 TBC1D9Q6ZT07 1266 aa23.04■■□□□ 1.28
HPS3-204ENST00000462030 RBM42Q9BTD8 480 aaKnown RBP23.04■■□□□ 1.28
HPS3-204ENST00000462030 ISY1Q9ULR0 285 aaKnown RBP23.04■■□□□ 1.28
HPS3-204ENST00000462030 MYO5BQ9ULV0 1848 aa23.04■■□□□ 1.28
HPS3-204ENST00000462030 ERBB4Q15303 1308 aa23.04■■□□□ 1.28
HPS3-204ENST00000462030 PRAM1Q96QH2 718 aa23.03■■□□□ 1.28
HPS3-204ENST00000462030 FBLN1P23142 703 aa23.03■■□□□ 1.28
HPS3-204ENST00000462030 THUMPD2Q9BTF0 503 aaKnown RBP23.03■■□□□ 1.28
HPS3-204ENST00000462030 KIF20BQ96Q89 1820 aa23.03■■□□□ 1.28
HPS3-204ENST00000462030 CLTCQ00610 1675 aaKnown RBP23.03■■□□□ 1.28
HPS3-204ENST00000462030 FAM135BQ49AJ0 1406 aa23.02■■□□□ 1.28
HPS3-204ENST00000462030 GCC1Q96CN9 775 aa23.02■■□□□ 1.28
HPS3-204ENST00000462030 FCHSD2O94868 740 aa23.02■■□□□ 1.28
HPS3-204ENST00000462030 HSP90AA1P07900 732 aaKnown RBP23.02■■□□□ 1.28
HPS3-204ENST00000462030 BRPF1P55201 1214 aaPredicted RBP23.02■■□□□ 1.28
HPS3-204ENST00000462030 CDC42BPGQ6DT37 1551 aa23.02■■□□□ 1.27
HPS3-204ENST00000462030 MRPL50Q8N5N7 158 aaKnown RBP23.01■■□□□ 1.27
HPS3-204ENST00000462030 SIRT2Q8IXJ6 389 aa23.01■■□□□ 1.27
HPS3-204ENST00000462030 TSPYL6Q8N831 410 aa23.01■■□□□ 1.27
HPS3-204ENST00000462030 K7ELQ4 463 aaPredicted RBP23■■□□□ 1.27
HPS3-204ENST00000462030 VAMP4O75379 141 aa23■■□□□ 1.27
HPS3-204ENST00000462030 ZFYVE9O95405 1425 aa23■■□□□ 1.27
HPS3-204ENST00000462030 ESPNB1AK53 854 aa23■■□□□ 1.27
HPS3-204ENST00000462030 PTCH1Q13635 1447 aa23■■□□□ 1.27
HPS3-204ENST00000462030 PHACTR3Q96KR7 559 aa22.99■■□□□ 1.27
HPS3-204ENST00000462030 PIK3R4Q99570 1358 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms