RNA–Protein interactions for RNA: ENST00000439374.6

CDC42SE1-202, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CDC42SE1, Length 3,498 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-202ENST00000439374 LTV1Q96GA3 475 aaPredicted RBP12.42□□□□□ -0.42
CDC42SE1-202ENST00000439374 ERVK-7P63135 1459 aa12.42□□□□□ -0.42
CDC42SE1-202ENST00000439374 ZMYM4Q5VZL5 1548 aa12.42□□□□□ -0.42
CDC42SE1-202ENST00000439374 FAM83GA6ND36 823 aa12.42□□□□□ -0.42
CDC42SE1-202ENST00000439374 TMEM57Q8N5G2 664 aa12.42□□□□□ -0.42
CDC42SE1-202ENST00000439374 DDX49Q9Y6V7 483 aaKnown RBP12.42□□□□□ -0.42
CDC42SE1-202ENST00000439374 MSNP26038 577 aaKnown RBP12.41□□□□□ -0.42
CDC42SE1-202ENST00000439374 NPATQ14207 1427 aa12.41□□□□□ -0.42
CDC42SE1-202ENST00000439374 TRIM27P14373 513 aa12.41□□□□□ -0.42
CDC42SE1-202ENST00000439374 GAS2L3Q86XJ1 694 aa12.41□□□□□ -0.42
CDC42SE1-202ENST00000439374 CHMP5Q9NZZ3 219 aa12.41□□□□□ -0.42
CDC42SE1-202ENST00000439374 DTNBO60941 627 aa12.41□□□□□ -0.42
CDC42SE1-202ENST00000439374 SLC26A8Q96RN1 970 aa12.41□□□□□ -0.42
CDC42SE1-202ENST00000439374 RTEL1-TNFRSF6BF6WH68 1400 aa12.4□□□□□ -0.42
CDC42SE1-202ENST00000439374 MVPQ14764 893 aaKnown RBP12.4□□□□□ -0.42
CDC42SE1-202ENST00000439374 MIS18AQ9NYP9 233 aa12.4□□□□□ -0.42
CDC42SE1-202ENST00000439374 FAM177BA6PVY3 158 aa12.39□□□□□ -0.43
CDC42SE1-202ENST00000439374 XPCQ01831 940 aaPredicted RBP12.39□□□□□ -0.43
CDC42SE1-202ENST00000439374 SLC4A10Q6U841 1118 aa12.39□□□□□ -0.43
CDC42SE1-202ENST00000439374 WDR63Q8IWG1 891 aa12.39□□□□□ -0.43
CDC42SE1-202ENST00000439374 PHACTR3Q96KR7 559 aa12.39□□□□□ -0.43
CDC42SE1-202ENST00000439374 CLTCL1P53675 1640 aa12.39□□□□□ -0.43
CDC42SE1-202ENST00000439374 EIF2AK4Q9P2K8 1649 aaKnown RBP12.39□□□□□ -0.43
CDC42SE1-202ENST00000439374 PIK3C2GO75747 1445 aa12.39□□□□□ -0.43
CDC42SE1-202ENST00000439374 PTMAP06454 111 aaKnown RBP12.39□□□□□ -0.43
CDC42SE1-202ENST00000439374 RBM33Q96EV2 1170 aaKnown RBP12.39□□□□□ -0.43
CDC42SE1-202ENST00000439374 PTPRTO14522 1441 aa12.39□□□□□ -0.43
CDC42SE1-202ENST00000439374 ZNF428Q96B54 188 aa12.39□□□□□ -0.43
CDC42SE1-202ENST00000439374 IQGAP3Q86VI3 1631 aa12.38□□□□□ -0.43
CDC42SE1-202ENST00000439374 IPO8O15397 1037 aaKnown RBP12.38□□□□□ -0.43
CDC42SE1-202ENST00000439374 MCTP1Q6DN14 999 aa12.38□□□□□ -0.43
CDC42SE1-202ENST00000439374 LMOD2Q6P5Q4 547 aa12.38□□□□□ -0.43
CDC42SE1-202ENST00000439374 TBC1D32Q96NH3 1257 aa12.38□□□□□ -0.43
CDC42SE1-202ENST00000439374 SLC52A1Q9NWF4 448 aa12.38□□□□□ -0.43
CDC42SE1-202ENST00000439374 ZHX1Q9UKY1 873 aaPredicted RBP12.38□□□□□ -0.43
CDC42SE1-202ENST00000439374 A0A1W2PP64 1363 aa12.38□□□□□ -0.43
CDC42SE1-202ENST00000439374 SSFA2P28290 1259 aa12.38□□□□□ -0.43
CDC42SE1-202ENST00000439374 CEBPAP49715 358 aaPredicted RBP12.38□□□□□ -0.43
CDC42SE1-202ENST00000439374 CAVIN1Q6NZI2 390 aaKnown RBP12.38□□□□□ -0.43
CDC42SE1-202ENST00000439374 ATF7IPQ6VMQ6 1270 aa12.38□□□□□ -0.43
CDC42SE1-202ENST00000439374 TNPO1Q92973 898 aaKnown RBP12.38□□□□□ -0.43
CDC42SE1-202ENST00000439374 MRE11P49959 708 aa12.37□□□□□ -0.43
CDC42SE1-202ENST00000439374 TRMT2AQ8IZ69 625 aaKnown RBP12.37□□□□□ -0.43
CDC42SE1-202ENST00000439374 COG3Q96JB2 828 aa12.37□□□□□ -0.43
CDC42SE1-202ENST00000439374 ZFYVE16Q7Z3T8 1539 aa12.37□□□□□ -0.43
CDC42SE1-202ENST00000439374 POLR1AO95602 1720 aaPredicted RBP12.37□□□□□ -0.43
CDC42SE1-202ENST00000439374 TSPYL6Q8N831 410 aa12.37□□□□□ -0.43
CDC42SE1-202ENST00000439374 E9PCH4 1651 aa12.37□□□□□ -0.43
CDC42SE1-202ENST00000439374 UNC13BO14795 1591 aa12.36□□□□□ -0.43
CDC42SE1-202ENST00000439374 KRT24Q2M2I5 525 aa12.36□□□□□ -0.43
CDC42SE1-202ENST00000439374 TSC1Q92574 1164 aa12.36□□□□□ -0.43
CDC42SE1-202ENST00000439374 CLASP1Q7Z460 1538 aa12.36□□□□□ -0.43
CDC42SE1-202ENST00000439374 MAPK8IP2Q13387 824 aaPredicted RBP12.36□□□□□ -0.43
CDC42SE1-202ENST00000439374 DDX19BQ9UMR2 479 aa12.36□□□□□ -0.43
CDC42SE1-202ENST00000439374 POLR3AO14802 1390 aaPredicted RBP12.36□□□□□ -0.43
CDC42SE1-202ENST00000439374 NASPP49321 788 aaPredicted RBP12.35□□□□□ -0.43
CDC42SE1-202ENST00000439374 JARID2Q92833 1246 aaPredicted RBP12.35□□□□□ -0.43
CDC42SE1-202ENST00000439374 RPGRIP1LQ68CZ1 1315 aa12.35□□□□□ -0.43
CDC42SE1-202ENST00000439374 ZNF518AQ6AHZ1 1483 aa12.35□□□□□ -0.43
CDC42SE1-202ENST00000439374 TRPM2O94759 1503 aa12.35□□□□□ -0.43
CDC42SE1-202ENST00000439374 SULT6B1Q6IMI4 303 aa12.35□□□□□ -0.43
CDC42SE1-202ENST00000439374 ANTXR1Q9H6X2 564 aa12.35□□□□□ -0.43
CDC42SE1-202ENST00000439374 RBM27Q9P2N5 1060 aaKnown RBP12.35□□□□□ -0.43
CDC42SE1-202ENST00000439374 TRIM35Q9UPQ4 493 aa12.35□□□□□ -0.43
CDC42SE1-202ENST00000439374 YEATS2Q9ULM3 1422 aa12.34□□□□□ -0.43
CDC42SE1-202ENST00000439374 CLCN1P35523 988 aa12.34□□□□□ -0.43
CDC42SE1-202ENST00000439374 MCM10Q7L590 875 aa12.34□□□□□ -0.43
CDC42SE1-202ENST00000439374 AEBP1Q8IUX7 1158 aa12.33□□□□□ -0.44
CDC42SE1-202ENST00000439374 SHROOM2Q13796 1616 aa12.33□□□□□ -0.44
CDC42SE1-202ENST00000439374 CD2BP2O95400 341 aaKnown RBP12.33□□□□□ -0.44
CDC42SE1-202ENST00000439374 NGEFQ8N5V2 710 aa12.33□□□□□ -0.44
CDC42SE1-202ENST00000439374 NGDNQ8NEJ9 315 aaKnown RBP12.33□□□□□ -0.44
CDC42SE1-202ENST00000439374 GBP4Q96PP9 640 aa12.33□□□□□ -0.44
CDC42SE1-202ENST00000439374 POLKQ9UBT6 870 aa12.33□□□□□ -0.44
CDC42SE1-202ENST00000439374 PLXNC1O60486 1568 aa12.33□□□□□ -0.44
CDC42SE1-202ENST00000439374 GOLGA6L22H0YM25 854 aa12.32□□□□□ -0.44
CDC42SE1-202ENST00000439374 NUDT16Q96DE0 195 aaKnown RBP12.32□□□□□ -0.44
CDC42SE1-202ENST00000439374 MADDQ8WXG6 1647 aa12.32□□□□□ -0.44
CDC42SE1-202ENST00000439374 IGSF3O75054 1194 aa12.32□□□□□ -0.44
CDC42SE1-202ENST00000439374 TWISTNBQ3B726 338 aaPredicted RBP12.32□□□□□ -0.44
CDC42SE1-202ENST00000439374 ANKRD36BQ8N2N9 1353 aa12.32□□□□□ -0.44
CDC42SE1-202ENST00000439374 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.31□□□□□ -0.44
CDC42SE1-202ENST00000439374 PODXL2Q9NZ53 605 aa12.31□□□□□ -0.44
CDC42SE1-202ENST00000439374 ATAD2Q6PL18 1390 aa12.31□□□□□ -0.44
CDC42SE1-202ENST00000439374 DDX11L8A8MPP1 907 aa12.31□□□□□ -0.44
CDC42SE1-202ENST00000439374 RRP9O43818 475 aaKnown RBP12.31□□□□□ -0.44
CDC42SE1-202ENST00000439374 INSRP06213 1382 aa12.3□□□□□ -0.44
CDC42SE1-202ENST00000439374 NPC1L1Q9UHC9 1359 aa12.3□□□□□ -0.44
CDC42SE1-202ENST00000439374 PRPF40AO75400 957 aaKnown RBP12.3□□□□□ -0.44
CDC42SE1-202ENST00000439374 C8orf58Q8NAV2 365 aa12.29□□□□□ -0.44
CDC42SE1-202ENST00000439374 UHRF1BP1LA0JNW5 1464 aa12.29□□□□□ -0.44
CDC42SE1-202ENST00000439374 TRHP20396 242 aaPredicted RBP12.29□□□□□ -0.44
CDC42SE1-202ENST00000439374 AMPHP49418 695 aa12.29□□□□□ -0.44
CDC42SE1-202ENST00000439374 CALD1Q05682 793 aaKnown RBP12.28□□□□□ -0.44
CDC42SE1-202ENST00000439374 PKP1Q13835 747 aa12.28□□□□□ -0.44
CDC42SE1-202ENST00000439374 ZNF830Q96NB3 372 aaPredicted RBP12.28□□□□□ -0.44
CDC42SE1-202ENST00000439374 RTF1Q92541 710 aaKnown RBP12.28□□□□□ -0.44
CDC42SE1-202ENST00000439374 SMARCA5O60264 1052 aaPredicted RBP12.28□□□□□ -0.44
CDC42SE1-202ENST00000439374 FCHSD2O94868 740 aa12.28□□□□□ -0.44
CDC42SE1-202ENST00000439374 MBIPQ9NS73 344 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms