RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 NFE2L2Q16236 605 aa13.84□□□□□ -0.19
PTPRF-204ENST00000412568 NEXNQ0ZGT2 675 aa13.83□□□□□ -0.19
PTPRF-204ENST00000412568 GTF2E1P29083 439 aaPredicted RBP13.83□□□□□ -0.2
PTPRF-204ENST00000412568 HDGFL1Q5TGJ6 251 aa13.83□□□□□ -0.2
PTPRF-204ENST00000412568 ACEP12821 1306 aa13.83□□□□□ -0.2
PTPRF-204ENST00000412568 RARSP54136 660 aaKnown RBP13.83□□□□□ -0.2
PTPRF-204ENST00000412568 TMEM57Q8N5G2 664 aa13.83□□□□□ -0.2
PTPRF-204ENST00000412568 DDX54Q8TDD1 881 aaKnown RBP13.83□□□□□ -0.2
PTPRF-204ENST00000412568 ABCC10Q5T3U5 1492 aa13.82□□□□□ -0.2
PTPRF-204ENST00000412568 HSP90AB2PQ58FF8 381 aa13.82□□□□□ -0.2
PTPRF-204ENST00000412568 RIC3Q7Z5B4 369 aa13.82□□□□□ -0.2
PTPRF-204ENST00000412568 TEX14Q8IWB6 1497 aa13.81□□□□□ -0.2
PTPRF-204ENST00000412568 MBD5Q9P267 1494 aa13.81□□□□□ -0.2
PTPRF-204ENST00000412568 SHANK2Q9UPX8 1470 aa13.81□□□□□ -0.2
PTPRF-204ENST00000412568 MVPQ14764 893 aaKnown RBP13.81□□□□□ -0.2
PTPRF-204ENST00000412568 UBTFL1P0CB47 393 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-204ENST00000412568 GPATCH3Q96I76 525 aa13.8□□□□□ -0.2
PTPRF-204ENST00000412568 PHF8Q9UPP1 1060 aa13.8□□□□□ -0.2
PTPRF-204ENST00000412568 ERCC6L2Q5T890 1561 aa13.8□□□□□ -0.2
PTPRF-204ENST00000412568 PLEKHO1Q53GL0 409 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-204ENST00000412568 TNRQ92752 1358 aa13.8□□□□□ -0.2
PTPRF-204ENST00000412568 HDAC5Q9UQL6 1122 aa13.79□□□□□ -0.2
PTPRF-204ENST00000412568 ADGRL2O95490 1459 aa13.79□□□□□ -0.2
PTPRF-204ENST00000412568 ANO2Q9NQ90 1003 aa13.79□□□□□ -0.2
PTPRF-204ENST00000412568 CFAP44Q96MT7 982 aa13.79□□□□□ -0.2
PTPRF-204ENST00000412568 PRDM11Q9NQV5 511 aa13.79□□□□□ -0.2
PTPRF-204ENST00000412568 FAM177BA6PVY3 158 aa13.79□□□□□ -0.2
PTPRF-204ENST00000412568 SURF6O75683 361 aaKnown RBP13.79□□□□□ -0.2
PTPRF-204ENST00000412568 CCDC30Q5VVM6 783 aa13.79□□□□□ -0.2
PTPRF-204ENST00000412568 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.79□□□□□ -0.2
PTPRF-204ENST00000412568 GOLGA6L4A6NEF3 574 aa13.78□□□□□ -0.2
PTPRF-204ENST00000412568 TOM1L2Q6ZVM7 507 aa13.78□□□□□ -0.2
PTPRF-204ENST00000412568 L1TD1Q5T7N2 865 aaKnown RBP13.78□□□□□ -0.2
PTPRF-204ENST00000412568 AEBP1Q8IUX7 1158 aa13.78□□□□□ -0.2
PTPRF-204ENST00000412568 MYL6BP14649 208 aa13.78□□□□□ -0.2
PTPRF-204ENST00000412568 SPINK5Q9NQ38 1064 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-204ENST00000412568 GBP4Q96PP9 640 aa13.77□□□□□ -0.2
PTPRF-204ENST00000412568 TNNQ9UQP3 1299 aa13.77□□□□□ -0.2
PTPRF-204ENST00000412568 PARD3Q8TEW0 1356 aa13.77□□□□□ -0.2
PTPRF-204ENST00000412568 F6X3S4 739 aa13.77□□□□□ -0.21
PTPRF-204ENST00000412568 DDX58O95786 925 aaKnown RBP13.77□□□□□ -0.21
PTPRF-204ENST00000412568 C22orf23Q9BZE7 217 aa13.77□□□□□ -0.21
PTPRF-204ENST00000412568 NUTM2BA6NNL0 878 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-204ENST00000412568 NUTM2EB1AL46 878 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-204ENST00000412568 IFIT2P09913 472 aaKnown RBP13.76□□□□□ -0.21
PTPRF-204ENST00000412568 NUTM2AQ8IVF1 878 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-204ENST00000412568 NFKBIBQ15653 356 aa13.76□□□□□ -0.21
PTPRF-204ENST00000412568 GSE1Q14687 1217 aa13.75□□□□□ -0.21
PTPRF-204ENST00000412568 ZRSR1Q15695 479 aaKnown RBP13.75□□□□□ -0.21
PTPRF-204ENST00000412568 ZMYM3Q14202 1370 aa13.75□□□□□ -0.21
PTPRF-204ENST00000412568 MPRIPQ6WCQ1 1025 aa13.75□□□□□ -0.21
PTPRF-204ENST00000412568 TATP17735 454 aaPredicted RBP13.75□□□□□ -0.21
PTPRF-204ENST00000412568 AAMPQ13685 434 aa13.75□□□□□ -0.21
PTPRF-204ENST00000412568 RBM42Q9BTD8 480 aaKnown RBP13.75□□□□□ -0.21
PTPRF-204ENST00000412568 DIAPH3Q9NSV4 1193 aa13.75□□□□□ -0.21
PTPRF-204ENST00000412568 UHRF1BP1LA0JNW5 1464 aa13.75□□□□□ -0.21
PTPRF-204ENST00000412568 RIMS2Q9UQ26 1411 aa13.75□□□□□ -0.21
PTPRF-204ENST00000412568 FRAT2O75474 233 aaPredicted RBP13.75□□□□□ -0.21
PTPRF-204ENST00000412568 G3BP1Q13283 466 aaKnown RBP eCLIP13.75□□□□□ -0.21
PTPRF-204ENST00000412568 POLKQ9UBT6 870 aa13.75□□□□□ -0.21
PTPRF-204ENST00000412568 PPP6R1Q9UPN7 881 aa13.75□□□□□ -0.21
PTPRF-204ENST00000412568 ST18O60284 1047 aa13.74□□□□□ -0.21
PTPRF-204ENST00000412568 ABCA8O94911 1581 aa13.74□□□□□ -0.21
PTPRF-204ENST00000412568 TRIM27P14373 513 aa13.74□□□□□ -0.21
PTPRF-204ENST00000412568 TULP1O00294 542 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-204ENST00000412568 HSPA2P54652 639 aa13.74□□□□□ -0.21
PTPRF-204ENST00000412568 NEUROD6Q96NK8 337 aa13.74□□□□□ -0.21
PTPRF-204ENST00000412568 TOMM22Q9NS69 142 aa13.74□□□□□ -0.21
PTPRF-204ENST00000412568 ISY1Q9ULR0 285 aaKnown RBP13.74□□□□□ -0.21
PTPRF-204ENST00000412568 PLEKHH1Q9ULM0 1364 aa13.73□□□□□ -0.21
PTPRF-204ENST00000412568 ATP7AQ04656 1500 aa13.73□□□□□ -0.21
PTPRF-204ENST00000412568 HSP90B1P14625 803 aaKnown RBP13.73□□□□□ -0.21
PTPRF-204ENST00000412568 YEATS2Q9ULM3 1422 aa13.73□□□□□ -0.21
PTPRF-204ENST00000412568 CHRNA2Q15822 529 aa13.73□□□□□ -0.21
PTPRF-204ENST00000412568 SPATA31E1Q6ZUB1 1445 aa13.73□□□□□ -0.21
PTPRF-204ENST00000412568 KCNA6P17658 529 aa13.73□□□□□ -0.21
PTPRF-204ENST00000412568 SIL1Q9H173 461 aa13.73□□□□□ -0.21
PTPRF-204ENST00000412568 BTBD11A6QL63 1104 aa13.72□□□□□ -0.21
PTPRF-204ENST00000412568 PIP4K2BP78356 416 aa13.72□□□□□ -0.21
PTPRF-204ENST00000412568 PHACTR3Q96KR7 559 aa13.72□□□□□ -0.21
PTPRF-204ENST00000412568 ARID3AQ99856 593 aa13.72□□□□□ -0.21
PTPRF-204ENST00000412568 DMRT2Q9Y5R5 561 aa13.72□□□□□ -0.21
PTPRF-204ENST00000412568 GNAT3A8MTJ3 354 aa13.72□□□□□ -0.21
PTPRF-204ENST00000412568 PTCD1O75127 700 aaKnown RBP13.72□□□□□ -0.21
PTPRF-204ENST00000412568 IL1RAPL2Q9NP60 686 aa13.72□□□□□ -0.21
PTPRF-204ENST00000412568 EXOC6BQ9Y2D4 811 aa13.72□□□□□ -0.21
PTPRF-204ENST00000412568 ANKRD36BQ8N2N9 1353 aa13.72□□□□□ -0.21
PTPRF-204ENST00000412568 ANXA1P04083 346 aa13.72□□□□□ -0.21
PTPRF-204ENST00000412568 UHRF1BP1Q6BDS2 1440 aa13.72□□□□□ -0.21
PTPRF-204ENST00000412568 MAP4K4O95819 1239 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-204ENST00000412568 IGHDP01880 384 aa13.71□□□□□ -0.21
PTPRF-204ENST00000412568 GNAI3P08754 354 aa13.71□□□□□ -0.21
PTPRF-204ENST00000412568 KRT24Q2M2I5 525 aa13.71□□□□□ -0.21
PTPRF-204ENST00000412568 TTC21BQ7Z4L5 1316 aa13.71□□□□□ -0.21
PTPRF-204ENST00000412568 A0A1W2PP64 1363 aa13.71□□□□□ -0.21
PTPRF-204ENST00000412568 GNAI2P04899 355 aa13.71□□□□□ -0.22
PTPRF-204ENST00000412568 NKTRP30414 1462 aaKnown RBP13.71□□□□□ -0.22
PTPRF-204ENST00000412568 GOLGA6L3A6NEY3 463 aa13.7□□□□□ -0.22
PTPRF-204ENST00000412568 MBIPQ9NS73 344 aa13.7□□□□□ -0.22
PTPRF-204ENST00000412568 ARHGEF12Q9NZN5 1544 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms