RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 C9orf78Q9NZ63 289 aaPredicted RBP14.39□□□□□ -0.11
SNX13-202ENST00000409604 METP08581 1390 aa14.39□□□□□ -0.11
SNX13-202ENST00000409604 ABCC1P33527 1531 aa14.39□□□□□ -0.11
SNX13-202ENST00000409604 PPIP5K1Q6PFW1 1433 aa14.39□□□□□ -0.11
SNX13-202ENST00000409604 GNAI1P63096 354 aa14.39□□□□□ -0.11
SNX13-202ENST00000409604 TMEM2Q9UHN6 1383 aa14.39□□□□□ -0.11
SNX13-202ENST00000409604 YTHDC2Q9H6S0 1430 aaKnown RBP14.39□□□□□ -0.11
SNX13-202ENST00000409604 TMPOP42166 694 aaKnown RBP14.39□□□□□ -0.11
SNX13-202ENST00000409604 KCNJ4P48050 445 aa14.38□□□□□ -0.11
SNX13-202ENST00000409604 NAP1L2Q9ULW6 460 aaPredicted RBP14.38□□□□□ -0.11
SNX13-202ENST00000409604 CABP4P57796 275 aa14.38□□□□□ -0.11
SNX13-202ENST00000409604 TWISTNBQ3B726 338 aaPredicted RBP14.37□□□□□ -0.11
SNX13-202ENST00000409604 ANXA1P04083 346 aa14.37□□□□□ -0.11
SNX13-202ENST00000409604 CCDC85AQ96PX6 553 aaPredicted RBP14.37□□□□□ -0.11
SNX13-202ENST00000409604 LMTK3Q96Q04 1460 aa14.37□□□□□ -0.11
SNX13-202ENST00000409604 ZNF335Q9H4Z2 1342 aaPredicted RBP14.37□□□□□ -0.11
SNX13-202ENST00000409604 SLC4A2P04920 1241 aa14.37□□□□□ -0.11
SNX13-202ENST00000409604 PPP1R1BQ9UD71 204 aaPredicted RBP14.36□□□□□ -0.11
SNX13-202ENST00000409604 PIP4K2AP48426 406 aaPredicted RBP14.36□□□□□ -0.11
SNX13-202ENST00000409604 GORABQ5T7V8 394 aa14.36□□□□□ -0.11
SNX13-202ENST00000409604 GAS2L2Q8NHY3 880 aa14.36□□□□□ -0.11
SNX13-202ENST00000409604 ANKRD45Q5TZF3 282 aa14.36□□□□□ -0.11
SNX13-202ENST00000409604 RIC3Q7Z5B4 369 aa14.36□□□□□ -0.11
SNX13-202ENST00000409604 WWC1Q8IX03 1113 aa14.36□□□□□ -0.11
SNX13-202ENST00000409604 TOM1O60784 492 aa14.35□□□□□ -0.11
SNX13-202ENST00000409604 HDGFL1Q5TGJ6 251 aa14.35□□□□□ -0.11
SNX13-202ENST00000409604 KCNH5Q8NCM2 988 aa14.35□□□□□ -0.11
SNX13-202ENST00000409604 POLKQ9UBT6 870 aa14.35□□□□□ -0.11
SNX13-202ENST00000409604 ANKRD24Q8TF21 1146 aa14.35□□□□□ -0.11
SNX13-202ENST00000409604 TRIM6-TRIM34B2RNG4 842 aa14.35□□□□□ -0.11
SNX13-202ENST00000409604 SKAP1Q86WV1 359 aa14.35□□□□□ -0.11
SNX13-202ENST00000409604 DZIP1LQ8IYY4 767 aaKnown RBP14.35□□□□□ -0.11
SNX13-202ENST00000409604 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.35□□□□□ -0.11
SNX13-202ENST00000409604 CDC42BPAQ5VT25 1732 aa14.34□□□□□ -0.11
SNX13-202ENST00000409604 GCP02774 474 aa14.34□□□□□ -0.11
SNX13-202ENST00000409604 RWDD1Q9H446 243 aaPredicted RBP14.34□□□□□ -0.11
SNX13-202ENST00000409604 A0A1W2PP64 1363 aa14.34□□□□□ -0.11
SNX13-202ENST00000409604 ACSBG1Q96GR2 724 aa14.34□□□□□ -0.11
SNX13-202ENST00000409604 MAST1Q9Y2H9 1570 aa14.33□□□□□ -0.12
SNX13-202ENST00000409604 MLH3Q9UHC1 1453 aa14.33□□□□□ -0.12
SNX13-202ENST00000409604 BICDL1Q6ZP65 573 aa14.32□□□□□ -0.12
SNX13-202ENST00000409604 SLAIN2Q9P270 581 aa14.32□□□□□ -0.12
SNX13-202ENST00000409604 PLA2R1Q13018 1463 aa14.32□□□□□ -0.12
SNX13-202ENST00000409604 PREX2Q70Z35 1606 aa14.32□□□□□ -0.12
SNX13-202ENST00000409604 BTBD11A6QL63 1104 aa14.32□□□□□ -0.12
SNX13-202ENST00000409604 COL17A1Q9UMD9 1497 aaPredicted RBP14.32□□□□□ -0.12
SNX13-202ENST00000409604 FRAT2O75474 233 aaPredicted RBP14.32□□□□□ -0.12
SNX13-202ENST00000409604 FCHSD2O94868 740 aa14.32□□□□□ -0.12
SNX13-202ENST00000409604 NEXNQ0ZGT2 675 aa14.32□□□□□ -0.12
SNX13-202ENST00000409604 SLC39A6Q13433 755 aa14.32□□□□□ -0.12
SNX13-202ENST00000409604 NOB1Q9ULX3 412 aaKnown RBP14.32□□□□□ -0.12
SNX13-202ENST00000409604 RALGAPBQ86X10 1494 aa14.32□□□□□ -0.12
SNX13-202ENST00000409604 PHACTR3Q96KR7 559 aa14.31□□□□□ -0.12
SNX13-202ENST00000409604 NPHP3Q7Z494 1330 aa14.31□□□□□ -0.12
SNX13-202ENST00000409604 PER1O15534 1290 aaPredicted RBP14.31□□□□□ -0.12
SNX13-202ENST00000409604 KRT24Q2M2I5 525 aa14.31□□□□□ -0.12
SNX13-202ENST00000409604 NFE2L2Q16236 605 aa14.3□□□□□ -0.12
SNX13-202ENST00000409604 SMG6Q86US8 1419 aaKnown RBP14.3□□□□□ -0.12
SNX13-202ENST00000409604 C20orf194Q5TEA3 1177 aa14.3□□□□□ -0.12
SNX13-202ENST00000409604 NOL8Q76FK4 1167 aaKnown RBP14.3□□□□□ -0.12
SNX13-202ENST00000409604 LNPKQ9C0E8 428 aa14.3□□□□□ -0.12
SNX13-202ENST00000409604 CHMP4BQ9H444 224 aaKnown RBP14.3□□□□□ -0.12
SNX13-202ENST00000409604 PRDM15P57071 1507 aaPredicted RBP14.3□□□□□ -0.12
SNX13-202ENST00000409604 MAP3K19Q56UN5 1328 aa14.3□□□□□ -0.12
SNX13-202ENST00000409604 FGD1P98174 961 aa14.3□□□□□ -0.12
SNX13-202ENST00000409604 EIF4A2Q14240 407 aaKnown RBP14.3□□□□□ -0.12
SNX13-202ENST00000409604 SPG7Q9UQ90 795 aa14.29□□□□□ -0.12
SNX13-202ENST00000409604 F6X3S4 739 aa14.29□□□□□ -0.12
SNX13-202ENST00000409604 MFAP1P55081 439 aaKnown RBP14.29□□□□□ -0.12
SNX13-202ENST00000409604 GNAT3A8MTJ3 354 aa14.29□□□□□ -0.12
SNX13-202ENST00000409604 JARID2Q92833 1246 aaPredicted RBP14.29□□□□□ -0.12
SNX13-202ENST00000409604 WWC3Q9ULE0 1092 aa14.29□□□□□ -0.12
SNX13-202ENST00000409604 ARHGEF5Q12774 1597 aa14.28□□□□□ -0.12
SNX13-202ENST00000409604 RILPL2Q969X0 211 aa14.28□□□□□ -0.12
SNX13-202ENST00000409604 ISY1Q9ULR0 285 aaKnown RBP14.28□□□□□ -0.12
SNX13-202ENST00000409604 TMEM94Q12767 1356 aa14.28□□□□□ -0.12
SNX13-202ENST00000409604 BTG4Q9NY30 223 aa14.27□□□□□ -0.12
SNX13-202ENST00000409604 LRPPRCP42704 1394 aaKnown RBP14.26□□□□□ -0.13
SNX13-202ENST00000409604 LRRIQ1Q96JM4 1722 aa14.26□□□□□ -0.13
SNX13-202ENST00000409604 EYA1Q99502 592 aa14.26□□□□□ -0.13
SNX13-202ENST00000409604 ROBO2Q9HCK4 1378 aa14.26□□□□□ -0.13
SNX13-202ENST00000409604 ANKRD36BQ8N2N9 1353 aa14.26□□□□□ -0.13
SNX13-202ENST00000409604 CASC1Q6TDU7 716 aa14.26□□□□□ -0.13
SNX13-202ENST00000409604 CDC42BPBQ9Y5S2 1711 aa14.25□□□□□ -0.13
SNX13-202ENST00000409604 SIL1Q9H173 461 aa14.25□□□□□ -0.13
SNX13-202ENST00000409604 HECW2Q9P2P5 1572 aa14.25□□□□□ -0.13
SNX13-202ENST00000409604 EXOC5O00471 708 aa14.25□□□□□ -0.13
SNX13-202ENST00000409604 FAM182BQ5T319 152 aa14.25□□□□□ -0.13
SNX13-202ENST00000409604 DUSP27Q5VZP5 1158 aa14.25□□□□□ -0.13
SNX13-202ENST00000409604 HMMRO75330 724 aa14.24□□□□□ -0.13
SNX13-202ENST00000409604 SSH1Q8WYL5 1049 aa14.24□□□□□ -0.13
SNX13-202ENST00000409604 G3V3G9 751 aa14.23□□□□□ -0.13
SNX13-202ENST00000409604 DDX58O95786 925 aaKnown RBP14.23□□□□□ -0.13
SNX13-202ENST00000409604 DCAF8Q5TAQ9 597 aa14.23□□□□□ -0.13
SNX13-202ENST00000409604 API5Q9BZZ5 524 aaKnown RBP14.23□□□□□ -0.13
SNX13-202ENST00000409604 FOXD4L1Q9NU39 408 aa14.23□□□□□ -0.13
SNX13-202ENST00000409604 CCDC30Q5VVM6 783 aa14.23□□□□□ -0.13
SNX13-202ENST00000409604 NEUROD6Q96NK8 337 aa14.22□□□□□ -0.13
SNX13-202ENST00000409604 SLFN5Q08AF3 891 aa14.22□□□□□ -0.13
SNX13-202ENST00000409604 MTHFSDQ2M296 383 aaKnown RBP14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms