RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 NSD3Q9BZ95 1437 aa13.31□□□□□ -0.28
HPS4-202ENST00000398145 CUL7Q14999 1698 aa13.31□□□□□ -0.28
HPS4-202ENST00000398145 GPRASP1Q5JY77 1395 aa13.31□□□□□ -0.28
HPS4-202ENST00000398145 CNTROBQ8N137 903 aa13.31□□□□□ -0.28
HPS4-202ENST00000398145 DHX29Q7Z478 1369 aaKnown RBP13.3□□□□□ -0.28
HPS4-202ENST00000398145 SYCE3A1L190 88 aa13.3□□□□□ -0.28
HPS4-202ENST00000398145 SURF6O75683 361 aaKnown RBP13.3□□□□□ -0.28
HPS4-202ENST00000398145 DISP3Q9P2K9 1392 aa13.3□□□□□ -0.28
HPS4-202ENST00000398145 SSFA2P28290 1259 aa13.3□□□□□ -0.28
HPS4-202ENST00000398145 GNAI2P04899 355 aa13.3□□□□□ -0.28
HPS4-202ENST00000398145 G3BP1Q13283 466 aaKnown RBP eCLIP13.3□□□□□ -0.28
HPS4-202ENST00000398145 TPD52L1Q16890 204 aaPredicted RBP13.3□□□□□ -0.28
HPS4-202ENST00000398145 TAF7LQ5H9L4 462 aa13.3□□□□□ -0.28
HPS4-202ENST00000398145 RPAP2Q8IXW5 612 aaPredicted RBP13.3□□□□□ -0.28
HPS4-202ENST00000398145 FCHSD2O94868 740 aa13.29□□□□□ -0.28
HPS4-202ENST00000398145 ARGLU1Q9NWB6 273 aaPredicted RBP13.29□□□□□ -0.28
HPS4-202ENST00000398145 KIAA0586Q9BVV6 1533 aa13.29□□□□□ -0.28
HPS4-202ENST00000398145 TRIM27P14373 513 aa13.29□□□□□ -0.28
HPS4-202ENST00000398145 NEXNQ0ZGT2 675 aa13.29□□□□□ -0.28
HPS4-202ENST00000398145 CLASRPQ8N2M8 674 aaKnown RBP13.29□□□□□ -0.28
HPS4-202ENST00000398145 CCDC192P0DO97 292 aa13.29□□□□□ -0.28
HPS4-202ENST00000398145 CPLX2Q6PUV4 134 aaKnown RBP13.29□□□□□ -0.28
HPS4-202ENST00000398145 PANK2Q9BZ23 570 aa13.29□□□□□ -0.28
HPS4-202ENST00000398145 ZNF330Q9Y3S2 320 aaPredicted RBP13.29□□□□□ -0.28
HPS4-202ENST00000398145 IQGAP2Q13576 1575 aa13.29□□□□□ -0.28
HPS4-202ENST00000398145 RALGAPBQ86X10 1494 aa13.29□□□□□ -0.28
HPS4-202ENST00000398145 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.29□□□□□ -0.28
HPS4-202ENST00000398145 SPC24Q8NBT2 197 aa13.29□□□□□ -0.28
HPS4-202ENST00000398145 PCDHB15Q9Y5E8 787 aa13.29□□□□□ -0.28
HPS4-202ENST00000398145 BICRAQ9NZM4 1560 aa13.29□□□□□ -0.28
HPS4-202ENST00000398145 PSMA5P28066 241 aa13.28□□□□□ -0.28
HPS4-202ENST00000398145 EID1Q9Y6B2 187 aa13.28□□□□□ -0.28
HPS4-202ENST00000398145 SLC4A2P04920 1241 aa13.28□□□□□ -0.28
HPS4-202ENST00000398145 CSB-PGBD3P0DP91 1061 aa13.28□□□□□ -0.28
HPS4-202ENST00000398145 BMP2KLQ5H9B9 411 aa13.28□□□□□ -0.28
HPS4-202ENST00000398145 ALDH1L2Q3SY69 923 aa13.27□□□□□ -0.28
HPS4-202ENST00000398145 MNS1Q8NEH6 495 aa13.27□□□□□ -0.28
HPS4-202ENST00000398145 CCDC9Q9Y3X0 531 aaKnown RBP13.27□□□□□ -0.28
HPS4-202ENST00000398145 CREBRFQ8IUR6 639 aa13.27□□□□□ -0.28
HPS4-202ENST00000398145 LRRCC1Q9C099 1032 aa13.27□□□□□ -0.28
HPS4-202ENST00000398145 CCDC141Q6ZP82 1450 aa13.27□□□□□ -0.29
HPS4-202ENST00000398145 SDF4Q9BRK5 362 aa13.27□□□□□ -0.29
HPS4-202ENST00000398145 CPLX1O14810 134 aa13.27□□□□□ -0.29
HPS4-202ENST00000398145 XPCQ01831 940 aaPredicted RBP13.27□□□□□ -0.29
HPS4-202ENST00000398145 KLHL40Q2TBA0 621 aa13.27□□□□□ -0.29
HPS4-202ENST00000398145 PRAM1Q96QH2 718 aa13.27□□□□□ -0.29
HPS4-202ENST00000398145 NAT10Q9H0A0 1025 aaKnown RBP13.27□□□□□ -0.29
HPS4-202ENST00000398145 ABCC11Q96J66 1382 aa13.27□□□□□ -0.29
HPS4-202ENST00000398145 CCT4P50991 539 aaKnown RBP13.26□□□□□ -0.29
HPS4-202ENST00000398145 CCDC30Q5VVM6 783 aa13.26□□□□□ -0.29
HPS4-202ENST00000398145 CCDC66A2RUB6 948 aa13.26□□□□□ -0.29
HPS4-202ENST00000398145 BCL11BQ9C0K0 894 aaPredicted RBP13.26□□□□□ -0.29
HPS4-202ENST00000398145 BAG4O95429 457 aaKnown RBP13.25□□□□□ -0.29
HPS4-202ENST00000398145 TPM1P09493 284 aa13.25□□□□□ -0.29
HPS4-202ENST00000398145 LRRFIP1Q32MZ4 808 aaKnown RBP13.25□□□□□ -0.29
HPS4-202ENST00000398145 C1orf141Q5JVX7 400 aa13.25□□□□□ -0.29
HPS4-202ENST00000398145 UGGT2Q9NYU1 1516 aa13.25□□□□□ -0.29
HPS4-202ENST00000398145 DDX58O95786 925 aaKnown RBP13.25□□□□□ -0.29
HPS4-202ENST00000398145 TULP1O00294 542 aaPredicted RBP13.25□□□□□ -0.29
HPS4-202ENST00000398145 FBXW7Q969H0 707 aa13.25□□□□□ -0.29
HPS4-202ENST00000398145 TOMM22Q9NS69 142 aa13.25□□□□□ -0.29
HPS4-202ENST00000398145 CC2D2AQ9P2K1 1620 aa13.25□□□□□ -0.29
HPS4-202ENST00000398145 ARHGEF11O15085 1522 aa13.24□□□□□ -0.29
HPS4-202ENST00000398145 KRT85P78386 507 aa13.24□□□□□ -0.29
HPS4-202ENST00000398145 NFE2L2Q16236 605 aa13.24□□□□□ -0.29
HPS4-202ENST00000398145 CCDC112Q8NEF3 446 aa13.24□□□□□ -0.29
HPS4-202ENST00000398145 SRCIN1Q9C0H9 1055 aa13.24□□□□□ -0.29
HPS4-202ENST00000398145 CABP1Q9NZU7 370 aa13.24□□□□□ -0.29
HPS4-202ENST00000398145 HDAC1Q13547 482 aaPredicted RBP13.24□□□□□ -0.29
HPS4-202ENST00000398145 AEBP1Q8IUX7 1158 aa13.24□□□□□ -0.29
HPS4-202ENST00000398145 KINO60870 393 aaKnown RBP13.24□□□□□ -0.29
HPS4-202ENST00000398145 ZMYND15Q9H091 742 aa13.24□□□□□ -0.29
HPS4-202ENST00000398145 MCM5P33992 734 aa13.23□□□□□ -0.29
HPS4-202ENST00000398145 TBC1D9Q6ZT07 1266 aa13.23□□□□□ -0.29
HPS4-202ENST00000398145 RASSF8Q8NHQ8 419 aa13.23□□□□□ -0.29
HPS4-202ENST00000398145 CYP46A1Q9Y6A2 500 aa13.23□□□□□ -0.29
HPS4-202ENST00000398145 MAGI1Q96QZ7 1491 aaPredicted RBP13.23□□□□□ -0.29
HPS4-202ENST00000398145 A0A0U1RQG5 324 aaPredicted RBP13.23□□□□□ -0.29
HPS4-202ENST00000398145 TSR1Q2NL82 804 aaKnown RBP13.23□□□□□ -0.29
HPS4-202ENST00000398145 SULT6B1Q6IMI4 303 aa13.23□□□□□ -0.29
HPS4-202ENST00000398145 SYNE3Q6ZMZ3 975 aa13.23□□□□□ -0.29
HPS4-202ENST00000398145 PER1O15534 1290 aaPredicted RBP13.22□□□□□ -0.29
HPS4-202ENST00000398145 TNMDQ9H2S6 317 aa13.22□□□□□ -0.29
HPS4-202ENST00000398145 PLEKHH1Q9ULM0 1364 aa13.22□□□□□ -0.29
HPS4-202ENST00000398145 SEC24BO95487 1268 aa13.22□□□□□ -0.29
HPS4-202ENST00000398145 THOC2Q8NI27 1593 aaKnown RBP13.22□□□□□ -0.29
HPS4-202ENST00000398145 ATAD2Q6PL18 1390 aa13.22□□□□□ -0.29
HPS4-202ENST00000398145 TRIM29Q14134 588 aa13.22□□□□□ -0.29
HPS4-202ENST00000398145 GAS2L2Q8NHY3 880 aa13.22□□□□□ -0.29
HPS4-202ENST00000398145 FSD1Q9BTV5 496 aa13.22□□□□□ -0.29
HPS4-202ENST00000398145 SCAF11Q99590 1463 aaKnown RBP13.22□□□□□ -0.29
HPS4-202ENST00000398145 FOSBP53539 338 aa13.21□□□□□ -0.29
HPS4-202ENST00000398145 PDCL2Q8N4E4 241 aa13.21□□□□□ -0.29
HPS4-202ENST00000398145 THUMPD2Q9BTF0 503 aaKnown RBP13.21□□□□□ -0.29
HPS4-202ENST00000398145 PES1O00541 588 aaKnown RBP13.21□□□□□ -0.29
HPS4-202ENST00000398145 UPF3BQ9BZI7 483 aaKnown RBP13.21□□□□□ -0.29
HPS4-202ENST00000398145 HOOK1Q9UJC3 728 aaKnown RBP13.21□□□□□ -0.29
HPS4-202ENST00000398145 IFT140Q96RY7 1462 aa13.21□□□□□ -0.29
HPS4-202ENST00000398145 LARP1BQ659C4 914 aaKnown RBP13.21□□□□□ -0.29
HPS4-202ENST00000398145 CDK19Q9BWU1 502 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms