RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ANKRD36BQ8N2N9 1353 aa13.95□□□□□ -0.18
VPS53-202ENST00000389040 USP6P35125 1406 aa13.95□□□□□ -0.18
VPS53-202ENST00000389040 DDX17Q92841 729 aaKnown RBP13.95□□□□□ -0.18
VPS53-202ENST00000389040 TNS3Q68CZ2 1445 aa13.94□□□□□ -0.18
VPS53-202ENST00000389040 COL16A1Q07092 1604 aaPredicted RBP13.94□□□□□ -0.18
VPS53-202ENST00000389040 KTN1Q86UP2 1357 aaKnown RBP13.94□□□□□ -0.18
VPS53-202ENST00000389040 PHLPP1O60346 1717 aa13.94□□□□□ -0.18
VPS53-202ENST00000389040 C11orf95C9JLR9 678 aaPredicted RBP13.94□□□□□ -0.18
VPS53-202ENST00000389040 SSH2Q76I76 1423 aa13.93□□□□□ -0.18
VPS53-202ENST00000389040 KIF7Q2M1P5 1343 aa13.93□□□□□ -0.18
VPS53-202ENST00000389040 EDC4Q6P2E9 1401 aaKnown RBP13.93□□□□□ -0.18
VPS53-202ENST00000389040 CD163L1Q9NR16 1453 aa13.92□□□□□ -0.18
VPS53-202ENST00000389040 A0A1W2PP64 1363 aa13.92□□□□□ -0.18
VPS53-202ENST00000389040 PNPLA6Q8IY17 1366 aa13.92□□□□□ -0.18
VPS53-202ENST00000389040 RGPD8O14715 1765 aaPredicted RBP13.92□□□□□ -0.18
VPS53-202ENST00000389040 PAK3O75914 559 aaPredicted RBP13.92□□□□□ -0.18
VPS53-202ENST00000389040 XPCQ01831 940 aaPredicted RBP13.92□□□□□ -0.18
VPS53-202ENST00000389040 TTC21BQ7Z4L5 1316 aa13.91□□□□□ -0.18
VPS53-202ENST00000389040 PPP4R3CPQ6ZMV5 832 aa13.91□□□□□ -0.18
VPS53-202ENST00000389040 NLRP13Q86W25 1043 aa13.91□□□□□ -0.18
VPS53-202ENST00000389040 ABTB2Q8N961 1025 aa13.91□□□□□ -0.18
VPS53-202ENST00000389040 POLR3GLQ9BT43 218 aa13.88□□□□□ -0.19
VPS53-202ENST00000389040 USP31Q70CQ4 1352 aa13.88□□□□□ -0.19
VPS53-202ENST00000389040 LMOD2Q6P5Q4 547 aa13.88□□□□□ -0.19
VPS53-202ENST00000389040 SHPRHQ149N8 1683 aa13.87□□□□□ -0.19
VPS53-202ENST00000389040 KCNH5Q8NCM2 988 aa13.87□□□□□ -0.19
VPS53-202ENST00000389040 PANK3Q9H999 370 aa13.87□□□□□ -0.19
VPS53-202ENST00000389040 NLRP6P59044 892 aa13.86□□□□□ -0.19
VPS53-202ENST00000389040 COL22A1Q8NFW1 1626 aaPredicted RBP13.86□□□□□ -0.19
VPS53-202ENST00000389040 TRPM3Q9HCF6 1732 aaPredicted RBP13.86□□□□□ -0.19
VPS53-202ENST00000389040 USP19O94966 1318 aa13.86□□□□□ -0.19
VPS53-202ENST00000389040 CGNL1Q0VF96 1302 aa13.86□□□□□ -0.19
VPS53-202ENST00000389040 CARD14Q9BXL6 1004 aa13.85□□□□□ -0.19
VPS53-202ENST00000389040 MED1Q15648 1581 aaPredicted RBP13.84□□□□□ -0.19
VPS53-202ENST00000389040 KNSTRNQ9Y448 316 aa13.84□□□□□ -0.19
VPS53-202ENST00000389040 AKAP12Q02952 1782 aa13.84□□□□□ -0.19
VPS53-202ENST00000389040 HAP1P54257 671 aaPredicted RBP13.84□□□□□ -0.19
VPS53-202ENST00000389040 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.84□□□□□ -0.194e-6■■■■□ 21.2
VPS53-202ENST00000389040 ALS2Q96Q42 1657 aa13.83□□□□□ -0.19
VPS53-202ENST00000389040 NSD2O96028 1365 aa13.83□□□□□ -0.2
VPS53-202ENST00000389040 MON2Q7Z3U7 1717 aa13.83□□□□□ -0.2
VPS53-202ENST00000389040 FYB1O15117 783 aa13.83□□□□□ -0.2
VPS53-202ENST00000389040 COG3Q96JB2 828 aa13.83□□□□□ -0.2
VPS53-202ENST00000389040 PER1O15534 1290 aaPredicted RBP13.82□□□□□ -0.2
VPS53-202ENST00000389040 GCP02774 474 aa13.82□□□□□ -0.2
VPS53-202ENST00000389040 NSD3Q9BZ95 1437 aa13.82□□□□□ -0.2
VPS53-202ENST00000389040 CPDO75976 1380 aa13.81□□□□□ -0.2
VPS53-202ENST00000389040 NPC1L1Q9UHC9 1359 aa13.81□□□□□ -0.2
VPS53-202ENST00000389040 NRKQ7Z2Y5 1582 aa13.81□□□□□ -0.2
VPS53-202ENST00000389040 NME9Q86XW9 330 aa13.81□□□□□ -0.2
VPS53-202ENST00000389040 PIAS4Q8N2W9 510 aaPredicted RBP13.81□□□□□ -0.2
VPS53-202ENST00000389040 PRKRIP1Q9H875 184 aaPredicted RBP13.81□□□□□ -0.2
VPS53-202ENST00000389040 MYOM1P52179 1685 aa13.81□□□□□ -0.2
VPS53-202ENST00000389040 NUTM2BA6NNL0 878 aaPredicted RBP13.8□□□□□ -0.2
VPS53-202ENST00000389040 NUTM2EB1AL46 878 aaPredicted RBP13.8□□□□□ -0.2
VPS53-202ENST00000389040 MEX3CQ5U5Q3 659 aaKnown RBP13.8□□□□□ -0.2
VPS53-202ENST00000389040 NUTM2AQ8IVF1 878 aaPredicted RBP13.8□□□□□ -0.2
VPS53-202ENST00000389040 OVOS2A0A0J9YW53 1432 aa13.79□□□□□ -0.2
VPS53-202ENST00000389040 OVOS2Q6IE36 1432 aa13.79□□□□□ -0.2
VPS53-202ENST00000389040 FNBP4Q8N3X1 1017 aaPredicted RBP13.79□□□□□ -0.2
VPS53-202ENST00000389040 NUTM2GQ5VZR2 741 aa13.78□□□□□ -0.2
VPS53-202ENST00000389040 CABLES1Q8TDN4 633 aa13.78□□□□□ -0.2
VPS53-202ENST00000389040 SLIT3O75094 1523 aa13.78□□□□□ -0.2
VPS53-202ENST00000389040 AMER1Q5JTC6 1135 aaPredicted RBP13.78□□□□□ -0.2
VPS53-202ENST00000389040 ADAMTS2O95450 1211 aa13.77□□□□□ -0.21
VPS53-202ENST00000389040 PIK3C2AO00443 1686 aa13.76□□□□□ -0.21
VPS53-202ENST00000389040 USP54Q70EL1 1684 aa13.76□□□□□ -0.21
VPS53-202ENST00000389040 ZNF772Q68DY9 489 aaPredicted RBP13.76□□□□□ -0.21
VPS53-202ENST00000389040 ARHGEF25Q86VW2 580 aa13.76□□□□□ -0.21
VPS53-202ENST00000389040 NGLY1Q96IV0 654 aa13.76□□□□□ -0.21
VPS53-202ENST00000389040 GGNBP2Q9H3C7 697 aa13.76□□□□□ -0.21
VPS53-202ENST00000389040 PRDM11Q9NQV5 511 aa13.76□□□□□ -0.21
VPS53-202ENST00000389040 LRP6O75581 1613 aa13.76□□□□□ -0.21
VPS53-202ENST00000389040 KIF24Q5T7B8 1368 aa13.76□□□□□ -0.21
VPS53-202ENST00000389040 AATKQ6ZMQ8 1374 aa13.76□□□□□ -0.21
VPS53-202ENST00000389040 FAM83GA6ND36 823 aa13.75□□□□□ -0.21
VPS53-202ENST00000389040 C8orf37Q96NL8 207 aa13.75□□□□□ -0.21
VPS53-202ENST00000389040 KIAA0232Q92628 1395 aa13.74□□□□□ -0.21
VPS53-202ENST00000389040 ZRANB1Q9UGI0 708 aa13.74□□□□□ -0.21
VPS53-202ENST00000389040 ZC3H6P61129 1189 aaKnown RBP13.73□□□□□ -0.21
VPS53-202ENST00000389040 MORC1Q86VD1 984 aa13.73□□□□□ -0.21
VPS53-202ENST00000389040 ABCC6O95255 1503 aa13.73□□□□□ -0.21
VPS53-202ENST00000389040 CCDC184Q52MB2 194 aa13.72□□□□□ -0.21
VPS53-202ENST00000389040 UNC5CLQ8IV45 518 aa13.72□□□□□ -0.21
VPS53-202ENST00000389040 USP21Q9UK80 565 aa13.72□□□□□ -0.21
VPS53-202ENST00000389040 SLIT2O94813 1529 aa13.72□□□□□ -0.21
VPS53-202ENST00000389040 CRYBG1Q9Y4K1 1723 aa13.71□□□□□ -0.21
VPS53-202ENST00000389040 NFAT5O94916 1531 aa13.71□□□□□ -0.21
VPS53-202ENST00000389040 MRS2Q9HD23 443 aa13.71□□□□□ -0.21
VPS53-202ENST00000389040 AFF2P51816 1311 aa13.71□□□□□ -0.21
VPS53-202ENST00000389040 RTL1A6NKG5 1358 aa13.71□□□□□ -0.21
VPS53-202ENST00000389040 PHRF1Q9P1Y6 1649 aaKnown RBP13.7□□□□□ -0.22
VPS53-202ENST00000389040 HNRNPUQ00839 825 aaKnown RBP eCLIP13.7□□□□□ -0.22
VPS53-202ENST00000389040 IP6K1Q92551 441 aa13.7□□□□□ -0.22
VPS53-202ENST00000389040 SUPT16HQ9Y5B9 1047 aaKnown RBP13.7□□□□□ -0.22
VPS53-202ENST00000389040 PLEKHG5O94827 1062 aa13.7□□□□□ -0.22
VPS53-202ENST00000389040 BTG4Q9NY30 223 aa13.7□□□□□ -0.22
VPS53-202ENST00000389040 TRPC5Q9UL62 973 aaPredicted RBP13.7□□□□□ -0.22
VPS53-202ENST00000389040 BLMP54132 1417 aaPredicted RBP13.69□□□□□ -0.22
VPS53-202ENST00000389040 BCL9LQ86UU0 1499 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms