RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 DDX23Q9BUQ8 820 aaKnown RBP13.77□□□□□ -0.2
VPS13A-205ENST00000376636 UQCRHLA0A096LP55 91 aa13.77□□□□□ -0.2
VPS13A-205ENST00000376636 UQCRHP07919 91 aa13.77□□□□□ -0.2
VPS13A-205ENST00000376636 CCDC148Q8NFR7 591 aa13.77□□□□□ -0.21
VPS13A-205ENST00000376636 BCCIPQ9P287 314 aaKnown RBP eCLIP13.77□□□□□ -0.21
VPS13A-205ENST00000376636 LUZP1Q86V48 1076 aa13.77□□□□□ -0.21
VPS13A-205ENST00000376636 LTV1Q96GA3 475 aaPredicted RBP13.77□□□□□ -0.21
VPS13A-205ENST00000376636 CRBNQ96SW2 442 aa13.77□□□□□ -0.21
VPS13A-205ENST00000376636 CETN2P41208 172 aa13.76□□□□□ -0.21
VPS13A-205ENST00000376636 GRIPAP1Q4V328 841 aa13.76□□□□□ -0.21
VPS13A-205ENST00000376636 SPC24Q8NBT2 197 aa13.76□□□□□ -0.21
VPS13A-205ENST00000376636 BCL2L13Q9BXK5 485 aa13.76□□□□□ -0.21
VPS13A-205ENST00000376636 FMNL2Q96PY5 1086 aa13.76□□□□□ -0.21
VPS13A-205ENST00000376636 EVA1CP58658 441 aa13.76□□□□□ -0.21
VPS13A-205ENST00000376636 ZNF397Q8NF99 534 aaPredicted RBP13.76□□□□□ -0.21
VPS13A-205ENST00000376636 GCOM1H8Y6P7 765 aaPredicted RBP13.76□□□□□ -0.21
VPS13A-205ENST00000376636 MYZAPP0CAP1 466 aa13.76□□□□□ -0.21
VPS13A-205ENST00000376636 CARMIL2Q6F5E8 1435 aa13.76□□□□□ -0.21
VPS13A-205ENST00000376636 ANKRD1Q15327 319 aa13.76□□□□□ -0.21
VPS13A-205ENST00000376636 CCDC18Q5T9S5 1454 aa13.75□□□□□ -0.21
VPS13A-205ENST00000376636 ERICH4A6NGS2 130 aa13.75□□□□□ -0.21
VPS13A-205ENST00000376636 CALCOCO1Q9P1Z2 691 aa13.75□□□□□ -0.21
VPS13A-205ENST00000376636 TBC1D2BQ9UPU7 963 aa13.75□□□□□ -0.21
VPS13A-205ENST00000376636 COG6Q9Y2V7 657 aa13.75□□□□□ -0.21
VPS13A-205ENST00000376636 RAB3GAP2Q9H2M9 1393 aa13.75□□□□□ -0.21
VPS13A-205ENST00000376636 RRP7AQ9Y3A4 280 aaKnown RBP13.75□□□□□ -0.21
VPS13A-205ENST00000376636 POTEJP0CG39 1038 aa13.75□□□□□ -0.21
VPS13A-205ENST00000376636 PDIA4P13667 645 aaKnown RBP13.74□□□□□ -0.21
VPS13A-205ENST00000376636 MPHOSPH9Q99550 1183 aa13.74□□□□□ -0.21
VPS13A-205ENST00000376636 ANAPC15P60006 121 aa13.74□□□□□ -0.21
VPS13A-205ENST00000376636 WASHC4Q2M389 1173 aa13.74□□□□□ -0.21
VPS13A-205ENST00000376636 EVC2Q86UK5 1308 aa13.74□□□□□ -0.21
VPS13A-205ENST00000376636 CCDC144AA2RUR9 1427 aa13.74□□□□□ -0.21
VPS13A-205ENST00000376636 MSH5O43196 834 aa13.74□□□□□ -0.21
VPS13A-205ENST00000376636 RBM10P98175 930 aaKnown RBP13.74□□□□□ -0.21
VPS13A-205ENST00000376636 IMMTQ16891 758 aaKnown RBP13.74□□□□□ -0.21
VPS13A-205ENST00000376636 TNMDQ9H2S6 317 aa13.74□□□□□ -0.21
VPS13A-205ENST00000376636 FKBP5Q13451 457 aaPredicted RBP13.74□□□□□ -0.21
VPS13A-205ENST00000376636 VPS8Q8N3P4 1428 aa13.74□□□□□ -0.21
VPS13A-205ENST00000376636 RSPH4AQ5TD94 716 aa13.74□□□□□ -0.21
VPS13A-205ENST00000376636 TANGO6Q9C0B7 1094 aa13.74□□□□□ -0.21
VPS13A-205ENST00000376636 STK38Q15208 465 aa13.74□□□□□ -0.21
VPS13A-205ENST00000376636 AEBP1Q8IUX7 1158 aa13.74□□□□□ -0.21
VPS13A-205ENST00000376636 SMC1AQ14683 1233 aaKnown RBP13.73□□□□□ -0.21
VPS13A-205ENST00000376636 POLR3GO15318 223 aaPredicted RBP13.73□□□□□ -0.21
VPS13A-205ENST00000376636 CCDC27Q2M243 656 aa13.73□□□□□ -0.21
VPS13A-205ENST00000376636 SAMD1Q6SPF0 538 aaPredicted RBP13.73□□□□□ -0.21
VPS13A-205ENST00000376636 KIAA1328Q86T90 577 aa13.73□□□□□ -0.21
VPS13A-205ENST00000376636 DCAF8L1A6NGE4 600 aa13.73□□□□□ -0.21
VPS13A-205ENST00000376636 ERC1Q8IUD2 1116 aa13.73□□□□□ -0.21
VPS13A-205ENST00000376636 TAF4BQ92750 862 aa13.73□□□□□ -0.21
VPS13A-205ENST00000376636 AEBP2Q6ZN18 517 aaPredicted RBP13.72□□□□□ -0.21
VPS13A-205ENST00000376636 TRIM22Q8IYM9 498 aa13.72□□□□□ -0.21
VPS13A-205ENST00000376636 PPP1R12BO60237 982 aaPredicted RBP13.72□□□□□ -0.21
VPS13A-205ENST00000376636 TICAM2Q86XR7 235 aa13.72□□□□□ -0.21
VPS13A-205ENST00000376636 EIF2S2P20042 333 aaKnown RBP13.72□□□□□ -0.21
VPS13A-205ENST00000376636 EPB41L2O43491 1005 aaKnown RBP13.72□□□□□ -0.21
VPS13A-205ENST00000376636 ARHGAP29Q52LW3 1261 aa13.71□□□□□ -0.21
VPS13A-205ENST00000376636 PLIN1O60240 522 aa13.71□□□□□ -0.21
VPS13A-205ENST00000376636 UBXN4Q92575 508 aa13.71□□□□□ -0.21
VPS13A-205ENST00000376636 GIGYF2Q6Y7W6 1299 aaKnown RBP13.71□□□□□ -0.21
VPS13A-205ENST00000376636 DHX37Q8IY37 1157 aaKnown RBP13.7□□□□□ -0.22
VPS13A-205ENST00000376636 C6orf163Q5TEZ5 329 aa13.7□□□□□ -0.22
VPS13A-205ENST00000376636 CCDC175P0C221 793 aa13.7□□□□□ -0.22
VPS13A-205ENST00000376636 EXOC6Q8TAG9 804 aa13.7□□□□□ -0.22
VPS13A-205ENST00000376636 CDKL5O76039 1030 aa13.7□□□□□ -0.22
VPS13A-205ENST00000376636 FAM177A1Q8N128 213 aaPredicted RBP13.7□□□□□ -0.22
VPS13A-205ENST00000376636 ME1P48163 572 aa13.69□□□□□ -0.22
VPS13A-205ENST00000376636 SMTNL1A8MU46 457 aa13.69□□□□□ -0.22
VPS13A-205ENST00000376636 ELL2O00472 640 aaPredicted RBP13.69□□□□□ -0.22
VPS13A-205ENST00000376636 FYB1O15117 783 aa13.69□□□□□ -0.22
VPS13A-205ENST00000376636 FOXD1Q16676 465 aa13.69□□□□□ -0.22
VPS13A-205ENST00000376636 NEUROD6Q96NK8 337 aa13.69□□□□□ -0.22
VPS13A-205ENST00000376636 BMP2KQ9NSY1 1161 aaPredicted RBP13.69□□□□□ -0.22
VPS13A-205ENST00000376636 SPECC1LQ69YQ0 1117 aa13.69□□□□□ -0.22
VPS13A-205ENST00000376636 WDR33Q9C0J8 1336 aaKnown RBP13.69□□□□□ -0.22
VPS13A-205ENST00000376636 TAOK3Q9H2K8 898 aa13.69□□□□□ -0.22
VPS13A-205ENST00000376636 VPS36Q86VN1 386 aa13.68□□□□□ -0.22
VPS13A-205ENST00000376636 PRPF40AO75400 957 aaKnown RBP13.68□□□□□ -0.22
VPS13A-205ENST00000376636 KRT85P78386 507 aa13.68□□□□□ -0.22
VPS13A-205ENST00000376636 CEP57L1Q8IYX8 460 aa13.68□□□□□ -0.22
VPS13A-205ENST00000376636 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.68□□□□□ -0.22
VPS13A-205ENST00000376636 V9GYY5 206 aaPredicted RBP13.68□□□□□ -0.22
VPS13A-205ENST00000376636 FIBPO43427 364 aa13.68□□□□□ -0.22
VPS13A-205ENST00000376636 FSD1Q9BTV5 496 aa13.68□□□□□ -0.22
VPS13A-205ENST00000376636 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.68□□□□□ -0.222e-6■■■□□ 18.5
VPS13A-205ENST00000376636 ZSCAN12O43309 604 aa13.68□□□□□ -0.22
VPS13A-205ENST00000376636 ZWINTO95229 277 aa13.68□□□□□ -0.22
VPS13A-205ENST00000376636 IFFO1Q0D2I5 559 aa13.67□□□□□ -0.22
VPS13A-205ENST00000376636 UBTFL1P0CB47 393 aaPredicted RBP13.67□□□□□ -0.22
VPS13A-205ENST00000376636 SEPT6Q14141 434 aa13.67□□□□□ -0.22
VPS13A-205ENST00000376636 MIA2Q96PC5 1412 aa13.67□□□□□ -0.22
VPS13A-205ENST00000376636 DAAM2Q86T65 1068 aa13.67□□□□□ -0.22
VPS13A-205ENST00000376636 GNAI1P63096 354 aa13.67□□□□□ -0.22
VPS13A-205ENST00000376636 CCDC113Q9H0I3 377 aa13.67□□□□□ -0.22
VPS13A-205ENST00000376636 HOOK3Q86VS8 718 aa13.67□□□□□ -0.22
VPS13A-205ENST00000376636 NOL7Q9UMY1 257 aaKnown RBP13.66□□□□□ -0.22
VPS13A-205ENST00000376636 FERP16591 822 aa13.66□□□□□ -0.22
VPS13A-205ENST00000376636 KIF5CO60282 957 aa13.66□□□□□ -0.22
VPS13A-205ENST00000376636 SPA17Q15506 151 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms