RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 EXOC6BQ9Y2D4 811 aa15.17■□□□□ 0.02
SNRNP48-201ENST00000342415 FAM83GA6ND36 823 aa15.17■□□□□ 0.02
SNRNP48-201ENST00000342415 NINLQ9Y2I6 1382 aa15.17■□□□□ 0.02
SNRNP48-201ENST00000342415 SCAF11Q99590 1463 aaKnown RBP15.16■□□□□ 0.02
SNRNP48-201ENST00000342415 MCM10Q7L590 875 aa15.16■□□□□ 0.02
SNRNP48-201ENST00000342415 WDR62O43379 1518 aa15.16■□□□□ 0.02
SNRNP48-201ENST00000342415 UPF3BQ9BZI7 483 aaKnown RBP15.16■□□□□ 0.02
SNRNP48-201ENST00000342415 RABEP1Q15276 862 aa15.16■□□□□ 0.02
SNRNP48-201ENST00000342415 HSP90B1P14625 803 aaKnown RBP15.15■□□□□ 0.02
SNRNP48-201ENST00000342415 TSHZ3Q63HK5 1081 aa15.15■□□□□ 0.02
SNRNP48-201ENST00000342415 TBC1D9Q6ZT07 1266 aa15.15■□□□□ 0.02
SNRNP48-201ENST00000342415 IL1RAPL2Q9NP60 686 aa15.15■□□□□ 0.02
SNRNP48-201ENST00000342415 DIAPH3Q9NSV4 1193 aa15.14■□□□□ 0.01
SNRNP48-201ENST00000342415 KIF14Q15058 1648 aa15.14■□□□□ 0.01
SNRNP48-201ENST00000342415 FAM135AQ9P2D6 1515 aa15.14■□□□□ 0.01
SNRNP48-201ENST00000342415 FOSBP53539 338 aa15.14■□□□□ 0.01
SNRNP48-201ENST00000342415 RRAGDQ9NQL2 400 aaPredicted RBP15.14■□□□□ 0.01
SNRNP48-201ENST00000342415 LARP6Q9BRS8 491 aaKnown RBP15.14■□□□□ 0.01
SNRNP48-201ENST00000342415 RAPGEF6Q8TEU7 1601 aa15.14■□□□□ 0.01
SNRNP48-201ENST00000342415 F6X3S4 739 aa15.14■□□□□ 0.01
SNRNP48-201ENST00000342415 SURF6O75683 361 aaKnown RBP15.14■□□□□ 0.01
SNRNP48-201ENST00000342415 FBXW7Q969H0 707 aa15.13■□□□□ 0.01
SNRNP48-201ENST00000342415 SYCE3A1L190 88 aa15.13■□□□□ 0.01
SNRNP48-201ENST00000342415 FIBPO43427 364 aa15.13■□□□□ 0.01
SNRNP48-201ENST00000342415 NOS1P29475 1434 aa15.13■□□□□ 0.01
SNRNP48-201ENST00000342415 DENND4BO75064 1496 aaPredicted RBP15.13■□□□□ 0.01
SNRNP48-201ENST00000342415 FCHSD2O94868 740 aa15.13■□□□□ 0.01
SNRNP48-201ENST00000342415 PHF14O94880 888 aa15.13■□□□□ 0.01
SNRNP48-201ENST00000342415 CT47B1P0C2W7 299 aaPredicted RBP15.12■□□□□ 0.01
SNRNP48-201ENST00000342415 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.12■□□□□ 0.01
SNRNP48-201ENST00000342415 NME9Q86XW9 330 aa15.12■□□□□ 0.01
SNRNP48-201ENST00000342415 C16orf71Q8IYS4 520 aaPredicted RBP15.12■□□□□ 0.01
SNRNP48-201ENST00000342415 GDPD2Q9HCC8 539 aa15.12■□□□□ 0.01
SNRNP48-201ENST00000342415 IDI1Q13907 227 aa15.12■□□□□ 0.01
SNRNP48-201ENST00000342415 NFE2L2Q16236 605 aa15.11■□□□□ 0.01
SNRNP48-201ENST00000342415 C9orf78Q9NZ63 289 aaPredicted RBP15.11■□□□□ 0.01
SNRNP48-201ENST00000342415 DDX54Q8TDD1 881 aaKnown RBP15.11■□□□□ 0.01
SNRNP48-201ENST00000342415 ZNF592Q92610 1267 aa15.11■□□□□ 0.01
SNRNP48-201ENST00000342415 A2MP01023 1474 aa15.11■□□□□ 0.01
SNRNP48-201ENST00000342415 CCDC173Q0VFZ6 552 aa15.11■□□□□ 0.01
SNRNP48-201ENST00000342415 UHRF1BP1Q6BDS2 1440 aa15.11■□□□□ 0.01
SNRNP48-201ENST00000342415 SMC3Q9UQE7 1217 aa15.11■□□□□ 0.01
SNRNP48-201ENST00000342415 RBM27Q9P2N5 1060 aaKnown RBP15.1■□□□□ 0.01
SNRNP48-201ENST00000342415 TSPYL6Q8N831 410 aa15.1■□□□□ 0.01
SNRNP48-201ENST00000342415 XPCQ01831 940 aaPredicted RBP15.1■□□□□ 0.01
SNRNP48-201ENST00000342415 DNMT1P26358 1616 aaKnown RBP15.1■□□□□ 0.01
SNRNP48-201ENST00000342415 TEFQ10587 303 aa15.1■□□□□ 0.01
SNRNP48-201ENST00000342415 EID1Q9Y6B2 187 aa15.1■□□□□ 0.01
SNRNP48-201ENST00000342415 ASXL1Q8IXJ9 1541 aa15.09■□□□□ 0.01
SNRNP48-201ENST00000342415 AIMP1Q12904 312 aaKnown RBP15.09■□□□□ 0.01
SNRNP48-201ENST00000342415 FBXO31Q5XUX0 539 aaPredicted RBP15.09■□□□□ 0.01
SNRNP48-201ENST00000342415 ERC2O15083 957 aa15.09■□□□□ 0.01
SNRNP48-201ENST00000342415 UBTFL1P0CB47 393 aaPredicted RBP15.09■□□□□ 0.01
SNRNP48-201ENST00000342415 CSB-PGBD3P0DP91 1061 aa15.09■□□□□ 0.01
SNRNP48-201ENST00000342415 SYCP2Q9BX26 1530 aa15.09■□□□□ 0.01
SNRNP48-201ENST00000342415 COL17A1Q9UMD9 1497 aaPredicted RBP15.09■□□□□ 0.01
SNRNP48-201ENST00000342415 DISP1Q96F81 1524 aa15.08■□□□□ 0.01
SNRNP48-201ENST00000342415 CIZ1Q9ULV3 898 aaPredicted RBP15.08■□□□□ 0.01
SNRNP48-201ENST00000342415 FYB1O15117 783 aa15.08■□□□□ 0
SNRNP48-201ENST00000342415 KRT24Q2M2I5 525 aa15.08■□□□□ 0
SNRNP48-201ENST00000342415 SPC24Q8NBT2 197 aa15.08■□□□□ 0
SNRNP48-201ENST00000342415 NLRP6P59044 892 aa15.07■□□□□ 0
SNRNP48-201ENST00000342415 GPATCH3Q96I76 525 aa15.07■□□□□ 0
SNRNP48-201ENST00000342415 GAS2L2Q8NHY3 880 aa15.07■□□□□ 0
SNRNP48-201ENST00000342415 C14orf93Q9H972 538 aaKnown RBP15.07■□□□□ 0
SNRNP48-201ENST00000342415 BAG4O95429 457 aaKnown RBP15.06■□□□□ 0
SNRNP48-201ENST00000342415 IFIT2P09913 472 aaKnown RBP15.06■□□□□ 0
SNRNP48-201ENST00000342415 ZRANB1Q9UGI0 708 aa15.06■□□□□ 0
SNRNP48-201ENST00000342415 NUCB1Q02818 461 aa15.06■□□□□ 0
SNRNP48-201ENST00000342415 BMP2KLQ5H9B9 411 aa15.06■□□□□ 0
SNRNP48-201ENST00000342415 MBIPQ9NS73 344 aa15.06■□□□□ 0
SNRNP48-201ENST00000342415 GNAI2P04899 355 aa15.06■□□□□ 0
SNRNP48-201ENST00000342415 TRAPPC8Q9Y2L5 1435 aa15.06■□□□□ 0
SNRNP48-201ENST00000342415 H3BQV1 296 aa15.05■□□□□ 0
SNRNP48-201ENST00000342415 IFFO2Q5TF58 517 aa15.05■□□□□ 0
SNRNP48-201ENST00000342415 NUTM1Q86Y26 1132 aa15.05■□□□□ 0
SNRNP48-201ENST00000342415 PHACTR3Q96KR7 559 aa15.05■□□□□ 0
SNRNP48-201ENST00000342415 SAMD9Q5K651 1589 aa15.05■□□□□ -0
SNRNP48-201ENST00000342415 ZKSCAN1P17029 563 aaPredicted RBP15.05■□□□□ -0
SNRNP48-201ENST00000342415 HDAC1Q13547 482 aaPredicted RBP15.05■□□□□ -0
SNRNP48-201ENST00000342415 ZSCAN30Q86W11 494 aa15.05■□□□□ -0
SNRNP48-201ENST00000342415 BICD2Q8TD16 824 aa15.05■□□□□ -0
SNRNP48-201ENST00000342415 ATP6V1DQ9Y5K8 247 aa15.05■□□□□ -0
SNRNP48-201ENST00000342415 C8orf58Q8NAV2 365 aa15.04■□□□□ -0
SNRNP48-201ENST00000342415 SLC26A8Q96RN1 970 aa15.04■□□□□ -0
SNRNP48-201ENST00000342415 KIAA0556O60303 1618 aa15.04■□□□□ -0
SNRNP48-201ENST00000342415 GOLGA6L6A8MZA4 724 aa15.04■□□□□ -0
SNRNP48-201ENST00000342415 DTNBO60941 627 aa15.03■□□□□ -0
SNRNP48-201ENST00000342415 GNL2Q13823 731 aaKnown RBP15.03■□□□□ -0
SNRNP48-201ENST00000342415 LRRCC1Q9C099 1032 aa15.03■□□□□ -0
SNRNP48-201ENST00000342415 TSPY26PQ9H489 355 aa15.03■□□□□ -0
SNRNP48-201ENST00000342415 MAGI2Q86UL8 1455 aa15.03■□□□□ -0
SNRNP48-201ENST00000342415 FAM184AQ8NB25 1140 aa15.03■□□□□ -0
SNRNP48-201ENST00000342415 ZBTB40Q9NUA8 1239 aa15.03■□□□□ -0
SNRNP48-201ENST00000342415 ZMYM4Q5VZL5 1548 aa15.03■□□□□ -0
SNRNP48-201ENST00000342415 ARHGEF12Q9NZN5 1544 aa15.03■□□□□ -0
SNRNP48-201ENST00000342415 BLMP54132 1417 aaPredicted RBP15.03■□□□□ -0
SNRNP48-201ENST00000342415 CEBPZQ03701 1054 aaKnown RBP15.03■□□□□ -0
SNRNP48-201ENST00000342415 ALDH1L2Q3SY69 923 aa15.03■□□□□ -0
SNRNP48-201ENST00000342415 ATAD2Q6PL18 1390 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms