RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ESF1Q9H501 851 aaKnown RBP23.68■■□□□ 1.38
SHKBP1-201ENST00000291842 MAPK8IP3Q9UPT6 1336 aa23.67■■□□□ 1.38
SHKBP1-201ENST00000291842 ADGRB2O60241 1585 aa23.66■■□□□ 1.38
SHKBP1-201ENST00000291842 DIAPH1O60610 1272 aaKnown RBP23.66■■□□□ 1.38
SHKBP1-201ENST00000291842 C8orf34Q49A92 452 aa23.66■■□□□ 1.38
SHKBP1-201ENST00000291842 TXNDC2Q86VQ3 553 aa23.66■■□□□ 1.38
SHKBP1-201ENST00000291842 TRIM35Q9UPQ4 493 aa23.66■■□□□ 1.38
SHKBP1-201ENST00000291842 FAM161AQ3B820 660 aa23.65■■□□□ 1.38
SHKBP1-201ENST00000291842 METP08581 1390 aa23.64■■□□□ 1.38
SHKBP1-201ENST00000291842 ANKRD26Q9UPS8 1709 aa23.64■■□□□ 1.37
SHKBP1-201ENST00000291842 ZMYM3Q14202 1370 aa23.64■■□□□ 1.37
SHKBP1-201ENST00000291842 MED14O60244 1454 aa23.63■■□□□ 1.37
SHKBP1-201ENST00000291842 RIPK4P57078 832 aa23.63■■□□□ 1.37
SHKBP1-201ENST00000291842 EXOSC9Q06265 439 aaKnown RBP23.62■■□□□ 1.37
SHKBP1-201ENST00000291842 NCKAP5LQ9HCH0 1330 aa23.62■■□□□ 1.37
SHKBP1-201ENST00000291842 SETD1AO15047 1707 aaKnown RBP23.61■■□□□ 1.37
SHKBP1-201ENST00000291842 NCBP3Q53F19 620 aaKnown RBP23.6■■□□□ 1.37
SHKBP1-201ENST00000291842 POLKQ9UBT6 870 aa23.6■■□□□ 1.37
SHKBP1-201ENST00000291842 PCDHB15Q9Y5E8 787 aa23.6■■□□□ 1.37
SHKBP1-201ENST00000291842 DLC1Q96QB1 1528 aa23.6■■□□□ 1.37
SHKBP1-201ENST00000291842 LAS1LQ9Y4W2 734 aaKnown RBP23.59■■□□□ 1.37
SHKBP1-201ENST00000291842 KIF20BQ96Q89 1820 aa23.59■■□□□ 1.37
SHKBP1-201ENST00000291842 WASLO00401 505 aaPredicted RBP23.59■■□□□ 1.37
SHKBP1-201ENST00000291842 ZRANB1Q9UGI0 708 aa23.59■■□□□ 1.37
SHKBP1-201ENST00000291842 PNPLA6Q8IY17 1366 aa23.58■■□□□ 1.37
SHKBP1-201ENST00000291842 NME9Q86XW9 330 aa23.57■■□□□ 1.36
SHKBP1-201ENST00000291842 NRXN3Q9Y4C0 1643 aa23.57■■□□□ 1.36
SHKBP1-201ENST00000291842 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.57■■□□□ 1.36
SHKBP1-201ENST00000291842 SMC4Q9NTJ3 1288 aa23.57■■□□□ 1.36
SHKBP1-201ENST00000291842 PPIP5K1Q6PFW1 1433 aa23.56■■□□□ 1.36
SHKBP1-201ENST00000291842 SLC4A3P48751 1232 aa23.56■■□□□ 1.36
SHKBP1-201ENST00000291842 EMILIN1Q9Y6C2 1016 aa23.56■■□□□ 1.36
SHKBP1-201ENST00000291842 KIF13AQ9H1H9 1805 aa23.55■■□□□ 1.36
SHKBP1-201ENST00000291842 HMOX1P09601 288 aa23.55■■□□□ 1.36
SHKBP1-201ENST00000291842 PRKAR2BP31323 418 aa23.55■■□□□ 1.36
SHKBP1-201ENST00000291842 ATP7BP35670 1465 aa23.55■■□□□ 1.36
SHKBP1-201ENST00000291842 ZKSCAN2Q63HK3 967 aa23.55■■□□□ 1.36
SHKBP1-201ENST00000291842 FTSJ3Q8IY81 847 aaKnown RBP23.54■■□□□ 1.36
SHKBP1-201ENST00000291842 NUDT16Q96DE0 195 aaKnown RBP23.54■■□□□ 1.36
SHKBP1-201ENST00000291842 SSH1Q8WYL5 1049 aa23.54■■□□□ 1.36
SHKBP1-201ENST00000291842 DZIP1LQ8IYY4 767 aaKnown RBP23.52■■□□□ 1.36
SHKBP1-201ENST00000291842 DDRGK1Q96HY6 314 aa23.52■■□□□ 1.36
SHKBP1-201ENST00000291842 FCHSD2O94868 740 aa23.52■■□□□ 1.36
SHKBP1-201ENST00000291842 MVPQ14764 893 aaKnown RBP23.52■■□□□ 1.36
SHKBP1-201ENST00000291842 PMFBP1Q8TBY8 1022 aa23.52■■□□□ 1.36
SHKBP1-201ENST00000291842 RSPH6AQ9H0K4 717 aa23.51■■□□□ 1.35
SHKBP1-201ENST00000291842 PNNQ9H307 717 aaKnown RBP23.51■■□□□ 1.35
SHKBP1-201ENST00000291842 PHACTR3Q96KR7 559 aa23.51■■□□□ 1.35
SHKBP1-201ENST00000291842 TNRQ92752 1358 aa23.51■■□□□ 1.35
SHKBP1-201ENST00000291842 LRRC7Q96NW7 1537 aa23.5■■□□□ 1.35
SHKBP1-201ENST00000291842 CPSF1Q10570 1443 aaKnown RBP23.5■■□□□ 1.35
SHKBP1-201ENST00000291842 MAP2P11137 1827 aaKnown RBP23.5■■□□□ 1.35
SHKBP1-201ENST00000291842 CT47B1P0C2W7 299 aaPredicted RBP23.49■■□□□ 1.35
SHKBP1-201ENST00000291842 TRIM27P14373 513 aa23.49■■□□□ 1.35
SHKBP1-201ENST00000291842 NOB1Q9ULX3 412 aaKnown RBP23.49■■□□□ 1.35
SHKBP1-201ENST00000291842 DEKP35659 375 aaKnown RBP23.48■■□□□ 1.35
SHKBP1-201ENST00000291842 HDGFP51858 240 aaKnown RBP23.48■■□□□ 1.35
SHKBP1-201ENST00000291842 RRS1Q15050 365 aaKnown RBP23.48■■□□□ 1.35
SHKBP1-201ENST00000291842 THUMPD2Q9BTF0 503 aaKnown RBP23.48■■□□□ 1.35
SHKBP1-201ENST00000291842 CCDC61Q9Y6R9 512 aa23.48■■□□□ 1.35
SHKBP1-201ENST00000291842 IL16Q14005 1332 aa23.48■■□□□ 1.35
SHKBP1-201ENST00000291842 EDC4Q6P2E9 1401 aaKnown RBP23.48■■□□□ 1.35
SHKBP1-201ENST00000291842 RTL5Q5HYW3 569 aaPredicted RBP23.48■■□□□ 1.35
SHKBP1-201ENST00000291842 NUTM2FA1L443 756 aa23.47■■□□□ 1.35
SHKBP1-201ENST00000291842 NEFMP07197 916 aa23.47■■□□□ 1.35
SHKBP1-201ENST00000291842 AAMPQ13685 434 aa23.47■■□□□ 1.35
SHKBP1-201ENST00000291842 PLPPR3Q6T4P5 718 aa23.47■■□□□ 1.35
SHKBP1-201ENST00000291842 ITPRIPQ8IWB1 547 aa23.46■■□□□ 1.35
SHKBP1-201ENST00000291842 PDZRN3Q9UPQ7 1066 aa23.46■■□□□ 1.35
SHKBP1-201ENST00000291842 RWDD1Q9H446 243 aaPredicted RBP23.45■■□□□ 1.35
SHKBP1-201ENST00000291842 FAM135BQ49AJ0 1406 aa23.45■■□□□ 1.34
SHKBP1-201ENST00000291842 CEBPAP49715 358 aaPredicted RBP23.45■■□□□ 1.34
SHKBP1-201ENST00000291842 COG3Q96JB2 828 aa23.45■■□□□ 1.34
SHKBP1-201ENST00000291842 TMEM2Q9UHN6 1383 aa23.45■■□□□ 1.34
SHKBP1-201ENST00000291842 SEC24BO95487 1268 aa23.44■■□□□ 1.34
SHKBP1-201ENST00000291842 ATF7IPQ6VMQ6 1270 aa23.44■■□□□ 1.34
SHKBP1-201ENST00000291842 CPS1P31327 1500 aa23.44■■□□□ 1.34
SHKBP1-201ENST00000291842 PRR36Q9H6K5 1346 aa23.44■■□□□ 1.34
SHKBP1-201ENST00000291842 IL13P35225 146 aa23.44■■□□□ 1.34
SHKBP1-201ENST00000291842 ROBO2Q9HCK4 1378 aa23.43■■□□□ 1.34
SHKBP1-201ENST00000291842 DAXXQ9UER7 740 aaPredicted RBP23.43■■□□□ 1.34
SHKBP1-201ENST00000291842 CDC42BPGQ6DT37 1551 aa23.42■■□□□ 1.34
SHKBP1-201ENST00000291842 LTKP29376 864 aa23.42■■□□□ 1.34
SHKBP1-201ENST00000291842 NFE2L2Q16236 605 aa23.42■■□□□ 1.34
SHKBP1-201ENST00000291842 TMEM57Q8N5G2 664 aa23.41■■□□□ 1.34
SHKBP1-201ENST00000291842 TECPR2O15040 1411 aa23.4■■□□□ 1.34
SHKBP1-201ENST00000291842 SLC26A8Q96RN1 970 aa23.4■■□□□ 1.34
SHKBP1-201ENST00000291842 SIRT1Q96EB6 747 aa23.39■■□□□ 1.33
SHKBP1-201ENST00000291842 UBR1Q8IWV7 1749 aa23.38■■□□□ 1.33
SHKBP1-201ENST00000291842 USP19O94966 1318 aa23.38■■□□□ 1.33
SHKBP1-201ENST00000291842 ELL2O00472 640 aaPredicted RBP23.37■■□□□ 1.33
SHKBP1-201ENST00000291842 DDX19BQ9UMR2 479 aa23.37■■□□□ 1.33
SHKBP1-201ENST00000291842 ADAMTS13Q76LX8 1427 aa23.37■■□□□ 1.33
SHKBP1-201ENST00000291842 KNDC1Q76NI1 1749 aa23.37■■□□□ 1.33
SHKBP1-201ENST00000291842 TSPYL6Q8N831 410 aa23.36■■□□□ 1.33
SHKBP1-201ENST00000291842 AATKQ6ZMQ8 1374 aa23.36■■□□□ 1.33
SHKBP1-201ENST00000291842 CDK12Q9NYV4 1490 aaPredicted RBP23.36■■□□□ 1.33
SHKBP1-201ENST00000291842 ZNF692Q9BU19 519 aaPredicted RBP23.35■■□□□ 1.33
SHKBP1-201ENST00000291842 KIF16BQ96L93 1317 aa23.35■■□□□ 1.33
SHKBP1-201ENST00000291842 FAM83GA6ND36 823 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms