RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 RWDD1Q9H446 243 aaPredicted RBP21.2■□□□□ 0.98
VPS54-201ENST00000272322 IL27Q8NEV9 243 aa21.19■□□□□ 0.98
VPS54-201ENST00000272322 PLEKHF1Q96S99 279 aa21.19■□□□□ 0.98
VPS54-201ENST00000272322 POLKQ9UBT6 870 aa21.19■□□□□ 0.98
VPS54-201ENST00000272322 PMFBP1Q8TBY8 1022 aa21.19■□□□□ 0.98
VPS54-201ENST00000272322 CEBPAP49715 358 aaPredicted RBP21.18■□□□□ 0.98
VPS54-201ENST00000272322 NGEFQ8N5V2 710 aa21.18■□□□□ 0.98
VPS54-201ENST00000272322 TSPYL6Q8N831 410 aa21.18■□□□□ 0.98
VPS54-201ENST00000272322 YTHDC2Q9H6S0 1430 aaKnown RBP21.18■□□□□ 0.98
VPS54-201ENST00000272322 GLI2P10070 1586 aa21.17■□□□□ 0.98
VPS54-201ENST00000272322 LNPKQ9C0E8 428 aa21.17■□□□□ 0.98
VPS54-201ENST00000272322 SIGLEC1Q9BZZ2 1709 aa21.16■□□□□ 0.98
VPS54-201ENST00000272322 PHF23Q9BUL5 403 aaPredicted RBP21.16■□□□□ 0.98
VPS54-201ENST00000272322 SLC26A8Q96RN1 970 aa21.16■□□□□ 0.98
VPS54-201ENST00000272322 LMTK2Q8IWU2 1503 aa21.15■□□□□ 0.98
VPS54-201ENST00000272322 APBB1O00213 710 aa21.14■□□□□ 0.97
VPS54-201ENST00000272322 ATF7IPQ6VMQ6 1270 aa21.14■□□□□ 0.97
VPS54-201ENST00000272322 ABCC11Q96J66 1382 aa21.13■□□□□ 0.97
VPS54-201ENST00000272322 KRT24Q2M2I5 525 aa21.13■□□□□ 0.97
VPS54-201ENST00000272322 UPF2Q9HAU5 1272 aaKnown RBP21.13■□□□□ 0.97
VPS54-201ENST00000272322 KIAA1210Q9ULL0 1709 aa21.13■□□□□ 0.97
VPS54-201ENST00000272322 USP19O94966 1318 aa21.12■□□□□ 0.97
VPS54-201ENST00000272322 ATAD2Q6PL18 1390 aa21.12■□□□□ 0.97
VPS54-201ENST00000272322 TSPOAP1O95153 1857 aa21.11■□□□□ 0.97
VPS54-201ENST00000272322 NUDT16Q96DE0 195 aaKnown RBP21.11■□□□□ 0.97
VPS54-201ENST00000272322 NEXMIFQ5QGS0 1516 aa21.11■□□□□ 0.97
VPS54-201ENST00000272322 CCDC27Q2M243 656 aa21.11■□□□□ 0.97
VPS54-201ENST00000272322 PPLO60437 1756 aa21.11■□□□□ 0.97
VPS54-201ENST00000272322 AEBP1Q8IUX7 1158 aa21.1■□□□□ 0.97
VPS54-201ENST00000272322 CAMSAP1Q5T5Y3 1602 aa21.1■□□□□ 0.97
VPS54-201ENST00000272322 DIP2CQ9Y2E4 1556 aa21.09■□□□□ 0.97
VPS54-201ENST00000272322 MIS18AQ9NYP9 233 aa21.09■□□□□ 0.97
VPS54-201ENST00000272322 NUTM2GQ5VZR2 741 aa21.09■□□□□ 0.97
VPS54-201ENST00000272322 COG3Q96JB2 828 aa21.08■□□□□ 0.96
VPS54-201ENST00000272322 NEO1Q92859 1461 aa21.07■□□□□ 0.96
VPS54-201ENST00000272322 IFT172Q9UG01 1749 aa21.07■□□□□ 0.96
VPS54-201ENST00000272322 WASLO00401 505 aaPredicted RBP21.07■□□□□ 0.96
VPS54-201ENST00000272322 BRPF3Q9ULD4 1205 aa21.07■□□□□ 0.96
VPS54-201ENST00000272322 SETBP1Q9Y6X0 1596 aa21.07■□□□□ 0.96
VPS54-201ENST00000272322 RBM33Q96EV2 1170 aaKnown RBP21.07■□□□□ 0.96
VPS54-201ENST00000272322 METP08581 1390 aa21.07■□□□□ 0.96
VPS54-201ENST00000272322 RSPH6AQ9H0K4 717 aa21.06■□□□□ 0.96
VPS54-201ENST00000272322 ANKRD45Q5TZF3 282 aa21.06■□□□□ 0.96
VPS54-201ENST00000272322 DDX19BQ9UMR2 479 aa21.06■□□□□ 0.96
VPS54-201ENST00000272322 FOXD4L1Q9NU39 408 aa21.05■□□□□ 0.96
VPS54-201ENST00000272322 PIK3C2BO00750 1634 aa21.05■□□□□ 0.96
VPS54-201ENST00000272322 FCHSD2O94868 740 aa21.05■□□□□ 0.96
VPS54-201ENST00000272322 SULT6B1Q6IMI4 303 aa21.04■□□□□ 0.96
VPS54-201ENST00000272322 MCM10Q7L590 875 aa21.04■□□□□ 0.96
VPS54-201ENST00000272322 C8orf58Q8NAV2 365 aa21.04■□□□□ 0.96
VPS54-201ENST00000272322 MYO5BQ9ULV0 1848 aa21.03■□□□□ 0.96
VPS54-201ENST00000272322 MBIPQ9NS73 344 aa21.03■□□□□ 0.96
VPS54-201ENST00000272322 SHPRHQ149N8 1683 aa21.03■□□□□ 0.96
VPS54-201ENST00000272322 NSD2O96028 1365 aa21.03■□□□□ 0.96
VPS54-201ENST00000272322 PTPRMP28827 1452 aa21.03■□□□□ 0.96
VPS54-201ENST00000272322 IQSEC2Q5JU85 1478 aa21.03■□□□□ 0.96
VPS54-201ENST00000272322 GSE1Q14687 1217 aa21.03■□□□□ 0.96
VPS54-201ENST00000272322 GZF1Q9H116 711 aaPredicted RBP21.02■□□□□ 0.96
VPS54-201ENST00000272322 RIMS2Q9UQ26 1411 aa21.02■□□□□ 0.95
VPS54-201ENST00000272322 ZBTB7CA1YPR0 619 aa21.02■□□□□ 0.95
VPS54-201ENST00000272322 IPO8O15397 1037 aaKnown RBP21.02■□□□□ 0.95
VPS54-201ENST00000272322 C14orf37Q86TY3 774 aa21.02■□□□□ 0.95
VPS54-201ENST00000272322 CCDC61Q9Y6R9 512 aa21.02■□□□□ 0.95
VPS54-201ENST00000272322 BECN1Q14457 450 aa21.01■□□□□ 0.95
VPS54-201ENST00000272322 NECTIN2Q92692 538 aa21.01■□□□□ 0.95
VPS54-201ENST00000272322 NFE2L2Q16236 605 aa21.01■□□□□ 0.95
VPS54-201ENST00000272322 HSP90AB2PQ58FF8 381 aa21.01■□□□□ 0.95
VPS54-201ENST00000272322 PUS7Q96PZ0 661 aaKnown RBP21.01■□□□□ 0.95
VPS54-201ENST00000272322 CD163L1Q9NR16 1453 aa21■□□□□ 0.95
VPS54-201ENST00000272322 TWISTNBQ3B726 338 aaPredicted RBP21■□□□□ 0.95
VPS54-201ENST00000272322 TBC1D2Q9BYX2 928 aa21■□□□□ 0.95
VPS54-201ENST00000272322 USP35Q9P2H5 1018 aa20.99■□□□□ 0.95
VPS54-201ENST00000272322 LTV1Q96GA3 475 aaPredicted RBP20.99■□□□□ 0.95
VPS54-201ENST00000272322 PPIP5K1Q6PFW1 1433 aa20.99■□□□□ 0.95
VPS54-201ENST00000272322 ARHGEF28Q8N1W1 1705 aaKnown RBP20.99■□□□□ 0.95
VPS54-201ENST00000272322 VAMP4O75379 141 aa20.98■□□□□ 0.95
VPS54-201ENST00000272322 PNNQ9H307 717 aaKnown RBP20.98■□□□□ 0.95
VPS54-201ENST00000272322 ZBTB40Q9NUA8 1239 aa20.98■□□□□ 0.95
VPS54-201ENST00000272322 MYO3AQ8NEV4 1616 aa20.98■□□□□ 0.95
VPS54-201ENST00000272322 C22orf23Q9BZE7 217 aa20.98■□□□□ 0.95
VPS54-201ENST00000272322 IL13P35225 146 aa20.97■□□□□ 0.95
VPS54-201ENST00000272322 FOXO3O43524 673 aa20.97■□□□□ 0.95
VPS54-201ENST00000272322 NINLQ9Y2I6 1382 aa20.96■□□□□ 0.95
VPS54-201ENST00000272322 ARHGAP31Q2M1Z3 1444 aa20.96■□□□□ 0.95
VPS54-201ENST00000272322 NEURL4Q96JN8 1562 aa20.96■□□□□ 0.95
VPS54-201ENST00000272322 PRR36Q9H6K5 1346 aa20.96■□□□□ 0.95
VPS54-201ENST00000272322 KIF16BQ96L93 1317 aa20.95■□□□□ 0.94
VPS54-201ENST00000272322 LTKP29376 864 aa20.95■□□□□ 0.94
VPS54-201ENST00000272322 TBC1D32Q96NH3 1257 aa20.95■□□□□ 0.94
VPS54-201ENST00000272322 ZC3H13Q5T200 1668 aaKnown RBP20.95■□□□□ 0.94
VPS54-201ENST00000272322 ZMYM3Q14202 1370 aa20.94■□□□□ 0.94
VPS54-201ENST00000272322 ALKQ9UM73 1620 aa20.94■□□□□ 0.94
VPS54-201ENST00000272322 SLC4A10Q6U841 1118 aa20.94■□□□□ 0.94
VPS54-201ENST00000272322 CFAP74Q9C0B2 1584 aa20.93■□□□□ 0.94
VPS54-201ENST00000272322 GNAI1P63096 354 aa20.92■□□□□ 0.94
VPS54-201ENST00000272322 ACEP12821 1306 aa20.92■□□□□ 0.94
VPS54-201ENST00000272322 NGDNQ8NEJ9 315 aaKnown RBP20.91■□□□□ 0.94
VPS54-201ENST00000272322 EIF4A2Q14240 407 aaKnown RBP20.91■□□□□ 0.94
VPS54-201ENST00000272322 CHD1LQ86WJ1 897 aa20.91■□□□□ 0.94
VPS54-201ENST00000272322 C16orf71Q8IYS4 520 aaPredicted RBP20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms