RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 HSCBQ8IWL3 235 aa34.66■■■■□ 3.14
CBX4-201ENST00000269397 FSD2A1L4K1 749 aa34.65■■■■□ 3.14
CBX4-201ENST00000269397 SRPK2P78362 688 aaKnown RBP34.65■■■■□ 3.14
CBX4-201ENST00000269397 SMC5Q8IY18 1101 aa34.65■■■■□ 3.14
CBX4-201ENST00000269397 LNPKQ9C0E8 428 aa34.65■■■■□ 3.14
CBX4-201ENST00000269397 RIPK4P57078 832 aa34.65■■■■□ 3.14
CBX4-201ENST00000269397 LMTK2Q8IWU2 1503 aa34.65■■■■□ 3.14
CBX4-201ENST00000269397 A0A1W2PP64 1363 aa34.64■■■■□ 3.14
CBX4-201ENST00000269397 NSD2O96028 1365 aa34.63■■■■□ 3.13
CBX4-201ENST00000269397 ZBTB40Q9NUA8 1239 aa34.63■■■■□ 3.13
CBX4-201ENST00000269397 GLI2P10070 1586 aa34.63■■■■□ 3.13
CBX4-201ENST00000269397 NCBP3Q53F19 620 aaKnown RBP34.62■■■■□ 3.13
CBX4-201ENST00000269397 RPGRIP1LQ68CZ1 1315 aa34.59■■■■□ 3.13
CBX4-201ENST00000269397 ZNF692Q9BU19 519 aaPredicted RBP34.58■■■■□ 3.13
CBX4-201ENST00000269397 ASXL2Q76L83 1435 aa34.56■■■■□ 3.12
CBX4-201ENST00000269397 VGFO15240 615 aaPredicted RBP34.55■■■■□ 3.12
CBX4-201ENST00000269397 FYB1O15117 783 aa34.55■■■■□ 3.12
CBX4-201ENST00000269397 ABCC11Q96J66 1382 aa34.54■■■■□ 3.12
CBX4-201ENST00000269397 ARHGEF28Q8N1W1 1705 aaKnown RBP34.54■■■■□ 3.12
CBX4-201ENST00000269397 NUCB1Q02818 461 aa34.54■■■■□ 3.12
CBX4-201ENST00000269397 PUS7Q96PZ0 661 aaKnown RBP34.53■■■■□ 3.12
CBX4-201ENST00000269397 MINK1Q8N4C8 1332 aaPredicted RBP34.53■■■■□ 3.12
CBX4-201ENST00000269397 IPO8O15397 1037 aaKnown RBP34.51■■■■□ 3.11
CBX4-201ENST00000269397 CHD1LQ86WJ1 897 aa34.51■■■■□ 3.11
CBX4-201ENST00000269397 C1orf115Q9H7X2 142 aa34.51■■■■□ 3.11
CBX4-201ENST00000269397 FOXD4L1Q9NU39 408 aa34.51■■■■□ 3.11
CBX4-201ENST00000269397 KIF16BQ96L93 1317 aa34.5■■■■□ 3.11
CBX4-201ENST00000269397 FBLN1P23142 703 aa34.5■■■■□ 3.11
CBX4-201ENST00000269397 COL3A1P02461 1466 aaPredicted RBP34.5■■■■□ 3.11
CBX4-201ENST00000269397 DIAPH1O60610 1272 aaKnown RBP34.49■■■■□ 3.11
CBX4-201ENST00000269397 CAMSAP1Q5T5Y3 1602 aa34.49■■■■□ 3.11
CBX4-201ENST00000269397 RBM25P49756 843 aaKnown RBP34.48■■■■□ 3.11
CBX4-201ENST00000269397 IL16Q14005 1332 aa34.48■■■■□ 3.11
CBX4-201ENST00000269397 FRMPD1Q5SYB0 1578 aa34.47■■■■□ 3.11
CBX4-201ENST00000269397 DDX11L8A8MPP1 907 aa34.47■■■■□ 3.11
CBX4-201ENST00000269397 ANKRD45Q5TZF3 282 aa34.47■■■■□ 3.11
CBX4-201ENST00000269397 TNPO1Q92973 898 aaKnown RBP34.47■■■■□ 3.11
CBX4-201ENST00000269397 HSP90AB1P08238 724 aaKnown RBP34.46■■■■□ 3.11
CBX4-201ENST00000269397 DDIT3P35638 169 aa34.45■■■■□ 3.11
CBX4-201ENST00000269397 MRE11P49959 708 aa34.45■■■■□ 3.1
CBX4-201ENST00000269397 THUMPD2Q9BTF0 503 aaKnown RBP34.44■■■■□ 3.1
CBX4-201ENST00000269397 GRPEL1Q9HAV7 217 aa34.44■■■■□ 3.1
CBX4-201ENST00000269397 CD2BP2O95400 341 aaKnown RBP34.43■■■■□ 3.1
CBX4-201ENST00000269397 IDI1Q13907 227 aa34.43■■■■□ 3.1
CBX4-201ENST00000269397 TERF2IPQ9NYB0 399 aa34.42■■■■□ 3.1
CBX4-201ENST00000269397 ABCC3O15438 1527 aa34.42■■■■□ 3.1
CBX4-201ENST00000269397 PRAM1Q96QH2 718 aa34.42■■■■□ 3.1
CBX4-201ENST00000269397 NCOA3Q9Y6Q9 1424 aa34.42■■■■□ 3.1
CBX4-201ENST00000269397 ELL2O00472 640 aaPredicted RBP34.41■■■■□ 3.1
CBX4-201ENST00000269397 SIGLEC1Q9BZZ2 1709 aa34.41■■■■□ 3.1
CBX4-201ENST00000269397 SNX21Q969T3 373 aa34.41■■■■□ 3.1
CBX4-201ENST00000269397 NEXMIFQ5QGS0 1516 aa34.41■■■■□ 3.1
CBX4-201ENST00000269397 PRKAR2BP31323 418 aa34.4■■■■□ 3.1
CBX4-201ENST00000269397 NAP1L5Q96NT1 182 aaPredicted RBP34.4■■■■□ 3.1
CBX4-201ENST00000269397 KIF2CQ99661 725 aa34.4■■■■□ 3.1
CBX4-201ENST00000269397 RBM42Q9BTD8 480 aaKnown RBP34.39■■■■□ 3.1
CBX4-201ENST00000269397 HSP90AA1P07900 732 aaKnown RBP34.39■■■■□ 3.1
CBX4-201ENST00000269397 UBE2Q2Q8WVN8 375 aa34.39■■■■□ 3.1
CBX4-201ENST00000269397 PNNQ9H307 717 aaKnown RBP34.39■■■■□ 3.1
CBX4-201ENST00000269397 ALDH1L2Q3SY69 923 aa34.38■■■■□ 3.09
CBX4-201ENST00000269397 HECW2Q9P2P5 1572 aa34.38■■■■□ 3.09
CBX4-201ENST00000269397 BMP2KLQ5H9B9 411 aa34.38■■■■□ 3.09
CBX4-201ENST00000269397 HMOX1P09601 288 aa34.37■■■■□ 3.09
CBX4-201ENST00000269397 SUGP2Q8IX01 1082 aaKnown RBP eCLIP34.37■■■■□ 3.09
CBX4-201ENST00000269397 TSPYL6Q8N831 410 aa34.37■■■■□ 3.09
CBX4-201ENST00000269397 ZBTB7BO15156 539 aaPredicted RBP34.36■■■■□ 3.09
CBX4-201ENST00000269397 PPIP5K1Q6PFW1 1433 aa34.36■■■■□ 3.09
CBX4-201ENST00000269397 POGZQ7Z3K3 1410 aa34.36■■■■□ 3.09
CBX4-201ENST00000269397 GAS2L3Q86XJ1 694 aa34.36■■■■□ 3.09
CBX4-201ENST00000269397 RAPGEF3O95398 923 aa34.35■■■■□ 3.09
CBX4-201ENST00000269397 CLCN1P35523 988 aa34.34■■■■□ 3.09
CBX4-201ENST00000269397 PHACTR3Q96KR7 559 aa34.34■■■■□ 3.09
CBX4-201ENST00000269397 CABP1Q9NZU7 370 aa34.34■■■■□ 3.09
CBX4-201ENST00000269397 TBC1D9Q6ZT07 1266 aa34.34■■■■□ 3.09
CBX4-201ENST00000269397 CD163L1Q9NR16 1453 aa34.34■■■■□ 3.09
CBX4-201ENST00000269397 FCHSD2O94868 740 aa34.31■■■■□ 3.08
CBX4-201ENST00000269397 RAB3GAP1Q15042 981 aa34.31■■■■□ 3.08
CBX4-201ENST00000269397 HDGFL2Q7Z4V5 671 aaPredicted RBP34.31■■■■□ 3.08
CBX4-201ENST00000269397 ATAD2Q6PL18 1390 aa34.31■■■■□ 3.08
CBX4-201ENST00000269397 SIRT2Q8IXJ6 389 aa34.3■■■■□ 3.08
CBX4-201ENST00000269397 GBP4Q96PP9 640 aa34.3■■■■□ 3.08
CBX4-201ENST00000269397 VAMP4O75379 141 aa34.3■■■■□ 3.08
CBX4-201ENST00000269397 MLH3Q9UHC1 1453 aa34.29■■■■□ 3.08
CBX4-201ENST00000269397 LRRC7Q96NW7 1537 aa34.29■■■■□ 3.08
CBX4-201ENST00000269397 MRPL50Q8N5N7 158 aaKnown RBP34.28■■■■□ 3.08
CBX4-201ENST00000269397 CDK19Q9BWU1 502 aa34.28■■■■□ 3.08
CBX4-201ENST00000269397 ERBB4Q15303 1308 aa34.28■■■■□ 3.08
CBX4-201ENST00000269397 PNPLA6Q8IY17 1366 aa34.28■■■■□ 3.08
CBX4-201ENST00000269397 GCC1Q96CN9 775 aa34.27■■■■□ 3.08
CBX4-201ENST00000269397 CIZ1Q9ULV3 898 aaPredicted RBP34.27■■■■□ 3.08
CBX4-201ENST00000269397 POLKQ9UBT6 870 aa34.26■■■■□ 3.07
CBX4-201ENST00000269397 CFAP74Q9C0B2 1584 aa34.26■■■■□ 3.07
CBX4-201ENST00000269397 PTPRMP28827 1452 aa34.25■■■■□ 3.07
CBX4-201ENST00000269397 K7ELQ4 463 aaPredicted RBP34.25■■■■□ 3.07
CBX4-201ENST00000269397 NPM1P06748 294 aaKnown RBP eCLIP34.25■■■■□ 3.07
CBX4-201ENST00000269397 PIK3C2BO00750 1634 aa34.24■■■■□ 3.07
CBX4-201ENST00000269397 SSFA2P28290 1259 aa34.24■■■■□ 3.07
CBX4-201ENST00000269397 GAS2L2Q8NHY3 880 aa34.24■■■■□ 3.07
CBX4-201ENST00000269397 MED14O60244 1454 aa34.24■■■■□ 3.07
CBX4-201ENST00000269397 ESPNB1AK53 854 aa34.22■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms