RNA–Protein interactions for RNA: ENST00000258607.9

CKAP2-201, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CKAP2, Length 3,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-201ENST00000258607 USP35Q9P2H5 1018 aa11.62□□□□□ -0.55
CKAP2-201ENST00000258607 SEC24BO95487 1268 aa11.61□□□□□ -0.55
CKAP2-201ENST00000258607 TMEM57Q8N5G2 664 aa11.61□□□□□ -0.55
CKAP2-201ENST00000258607 FRMPD1Q5SYB0 1578 aa11.61□□□□□ -0.55
CKAP2-201ENST00000258607 PRR36Q9H6K5 1346 aa11.61□□□□□ -0.55
CKAP2-201ENST00000258607 ANXA1P04083 346 aa11.61□□□□□ -0.55
CKAP2-201ENST00000258607 STAC3Q96MF2 364 aa11.61□□□□□ -0.55
CKAP2-201ENST00000258607 INO80Q9ULG1 1556 aaPredicted RBP11.61□□□□□ -0.55
CKAP2-201ENST00000258607 TET3O43151 1660 aa11.6□□□□□ -0.55
CKAP2-201ENST00000258607 MLH3Q9UHC1 1453 aa11.6□□□□□ -0.55
CKAP2-201ENST00000258607 KIF1BO60333 1816 aa11.6□□□□□ -0.55
CKAP2-201ENST00000258607 F6X3S4 739 aa11.6□□□□□ -0.55
CKAP2-201ENST00000258607 HDGFP51858 240 aaKnown RBP11.6□□□□□ -0.55
CKAP2-201ENST00000258607 DZIP1LQ8IYY4 767 aaKnown RBP11.6□□□□□ -0.55
CKAP2-201ENST00000258607 KAT6BQ8WYB5 2073 aa11.6□□□□□ -0.55
CKAP2-201ENST00000258607 CABLES1Q8TDN4 633 aa11.6□□□□□ -0.55
CKAP2-201ENST00000258607 RIMBP3CA6NJZ7 1639 aa11.6□□□□□ -0.55
CKAP2-201ENST00000258607 RIMBP3BA6NNM3 1639 aa11.6□□□□□ -0.55
CKAP2-201ENST00000258607 EIF2AK4Q9P2K8 1649 aaKnown RBP11.6□□□□□ -0.55
CKAP2-201ENST00000258607 RIMBP3Q9UFD9 1639 aa11.6□□□□□ -0.55
CKAP2-201ENST00000258607 TRIM27P14373 513 aa11.59□□□□□ -0.55
CKAP2-201ENST00000258607 ZKSCAN2Q63HK3 967 aa11.59□□□□□ -0.55
CKAP2-201ENST00000258607 PPIP5K1Q6PFW1 1433 aa11.59□□□□□ -0.55
CKAP2-201ENST00000258607 ANKRD36BQ8N2N9 1353 aa11.59□□□□□ -0.55
CKAP2-201ENST00000258607 PSME1Q06323 249 aa11.59□□□□□ -0.55
CKAP2-201ENST00000258607 IPO9Q96P70 1041 aaKnown RBP11.59□□□□□ -0.55
CKAP2-201ENST00000258607 TRIM35Q9UPQ4 493 aa11.59□□□□□ -0.55
CKAP2-201ENST00000258607 TNRQ92752 1358 aa11.59□□□□□ -0.55
CKAP2-201ENST00000258607 ERICH6BQ5W0A0 696 aa11.59□□□□□ -0.55
CKAP2-201ENST00000258607 ZNF330Q9Y3S2 320 aaPredicted RBP11.59□□□□□ -0.55
CKAP2-201ENST00000258607 MROH1Q8NDA8 1641 aa11.58□□□□□ -0.56
CKAP2-201ENST00000258607 PDZRN3Q9UPQ7 1066 aa11.58□□□□□ -0.56
CKAP2-201ENST00000258607 ANKRD45Q5TZF3 282 aa11.58□□□□□ -0.56
CKAP2-201ENST00000258607 C8orf58Q8NAV2 365 aa11.58□□□□□ -0.56
CKAP2-201ENST00000258607 MAP3K4Q9Y6R4 1608 aa11.58□□□□□ -0.56
CKAP2-201ENST00000258607 RTF1Q92541 710 aaKnown RBP11.58□□□□□ -0.56
CKAP2-201ENST00000258607 LRRC59Q96AG4 307 aaKnown RBP11.58□□□□□ -0.56
CKAP2-201ENST00000258607 CCDC9Q9Y3X0 531 aaKnown RBP11.58□□□□□ -0.56
CKAP2-201ENST00000258607 SRCAPQ6ZRS2 3230 aa11.57□□□□□ -0.56
CKAP2-201ENST00000258607 ORAI2Q96SN7 254 aa11.57□□□□□ -0.56
CKAP2-201ENST00000258607 PIP4K2AP48426 406 aaPredicted RBP11.57□□□□□ -0.56
CKAP2-201ENST00000258607 HAP1P54257 671 aaPredicted RBP11.57□□□□□ -0.56
CKAP2-201ENST00000258607 BACH2Q9BYV9 841 aa11.57□□□□□ -0.56
CKAP2-201ENST00000258607 ROBO2Q9HCK4 1378 aa11.57□□□□□ -0.56
CKAP2-201ENST00000258607 TSHZ3Q63HK5 1081 aa11.56□□□□□ -0.56
CKAP2-201ENST00000258607 CENPQQ7L2Z9 268 aaPredicted RBP11.56□□□□□ -0.56
CKAP2-201ENST00000258607 DIP2CQ9Y2E4 1556 aa11.56□□□□□ -0.56
CKAP2-201ENST00000258607 TWISTNBQ3B726 338 aaPredicted RBP11.56□□□□□ -0.56
CKAP2-201ENST00000258607 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.56□□□□□ -0.56
CKAP2-201ENST00000258607 EIF4A2Q14240 407 aaKnown RBP11.55□□□□□ -0.56
CKAP2-201ENST00000258607 MBIPQ9NS73 344 aa11.55□□□□□ -0.56
CKAP2-201ENST00000258607 NKTRP30414 1462 aaKnown RBP11.55□□□□□ -0.56
CKAP2-201ENST00000258607 RNF123Q5XPI4 1314 aa11.55□□□□□ -0.56
CKAP2-201ENST00000258607 NEO1Q92859 1461 aa11.54□□□□□ -0.56
CKAP2-201ENST00000258607 CSB-PGBD3P0DP91 1061 aa11.54□□□□□ -0.56
CKAP2-201ENST00000258607 CHRNA2Q15822 529 aa11.54□□□□□ -0.56
CKAP2-201ENST00000258607 NOL8Q76FK4 1167 aaKnown RBP11.54□□□□□ -0.56
CKAP2-201ENST00000258607 ZNF521Q96K83 1311 aa11.54□□□□□ -0.56
CKAP2-201ENST00000258607 DTNBO60941 627 aa11.54□□□□□ -0.56
CKAP2-201ENST00000258607 BLMP54132 1417 aaPredicted RBP11.54□□□□□ -0.56
CKAP2-201ENST00000258607 KDM5AP29375 1690 aaKnown RBP11.53□□□□□ -0.56
CKAP2-201ENST00000258607 SMARCA5O60264 1052 aaPredicted RBP11.53□□□□□ -0.56
CKAP2-201ENST00000258607 TSPYL4Q9UJ04 414 aa11.53□□□□□ -0.56
CKAP2-201ENST00000258607 MYO5BQ9ULV0 1848 aa11.53□□□□□ -0.56
CKAP2-201ENST00000258607 THEMISQ8N1K5 641 aaPredicted RBP11.53□□□□□ -0.56
CKAP2-201ENST00000258607 TAOK2Q9UL54 1235 aa11.53□□□□□ -0.56
CKAP2-201ENST00000258607 SYNMO15061 1565 aa11.53□□□□□ -0.56
CKAP2-201ENST00000258607 SIGLEC1Q9BZZ2 1709 aa11.53□□□□□ -0.56
CKAP2-201ENST00000258607 TTC21BQ7Z4L5 1316 aa11.52□□□□□ -0.56
CKAP2-201ENST00000258607 PROSER2Q86WR7 435 aaPredicted RBP11.52□□□□□ -0.56
CKAP2-201ENST00000258607 TULP4Q9NRJ4 1543 aa11.52□□□□□ -0.56
CKAP2-201ENST00000258607 SLC4A2P04920 1241 aa11.52□□□□□ -0.57
CKAP2-201ENST00000258607 AIMP1Q12904 312 aaKnown RBP11.52□□□□□ -0.57
CKAP2-201ENST00000258607 ATF7IPQ6VMQ6 1270 aa11.52□□□□□ -0.57
CKAP2-201ENST00000258607 RSPH6AQ9H0K4 717 aa11.51□□□□□ -0.57
CKAP2-201ENST00000258607 GZF1Q9H116 711 aaPredicted RBP11.51□□□□□ -0.57
CKAP2-201ENST00000258607 GLI2P10070 1586 aa11.51□□□□□ -0.57
CKAP2-201ENST00000258607 MAP3K19Q56UN5 1328 aa11.51□□□□□ -0.57
CKAP2-201ENST00000258607 DEKP35659 375 aaKnown RBP11.51□□□□□ -0.57
CKAP2-201ENST00000258607 JARID2Q92833 1246 aaPredicted RBP11.51□□□□□ -0.57
CKAP2-201ENST00000258607 POLR3AO14802 1390 aaPredicted RBP11.51□□□□□ -0.57
CKAP2-201ENST00000258607 NFE2L2Q16236 605 aa11.51□□□□□ -0.57
CKAP2-201ENST00000258607 FAM161AQ3B820 660 aa11.51□□□□□ -0.57
CKAP2-201ENST00000258607 MPRIPQ6WCQ1 1025 aa11.51□□□□□ -0.57
CKAP2-201ENST00000258607 HSP90AA1P07900 732 aaKnown RBP11.5□□□□□ -0.57
CKAP2-201ENST00000258607 MVPQ14764 893 aaKnown RBP11.5□□□□□ -0.57
CKAP2-201ENST00000258607 ADGRB3O60242 1522 aa11.5□□□□□ -0.57
CKAP2-201ENST00000258607 ZMYM4Q5VZL5 1548 aa11.5□□□□□ -0.57
CKAP2-201ENST00000258607 RWDD1Q9H446 243 aaPredicted RBP11.5□□□□□ -0.57
CKAP2-201ENST00000258607 FKBP5Q13451 457 aaPredicted RBP11.5□□□□□ -0.57
CKAP2-201ENST00000258607 C16orf71Q8IYS4 520 aaPredicted RBP11.5□□□□□ -0.57
CKAP2-201ENST00000258607 FOXD4L5Q5VV16 416 aaPredicted RBP11.49□□□□□ -0.57
CKAP2-201ENST00000258607 G2E3Q7L622 706 aa11.49□□□□□ -0.57
CKAP2-201ENST00000258607 FOXD4L4Q8WXT5 416 aaPredicted RBP11.49□□□□□ -0.57
CKAP2-201ENST00000258607 CAMSAP1Q5T5Y3 1602 aa11.49□□□□□ -0.57
CKAP2-201ENST00000258607 FCHSD2O94868 740 aa11.49□□□□□ -0.57
CKAP2-201ENST00000258607 MTHFSDQ2M296 383 aaKnown RBP11.49□□□□□ -0.57
CKAP2-201ENST00000258607 PLEKHF1Q96S99 279 aa11.49□□□□□ -0.57
CKAP2-201ENST00000258607 NLRP2Q9NX02 1062 aa11.49□□□□□ -0.57
CKAP2-201ENST00000258607 CLTCQ00610 1675 aaKnown RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms