RNA–Protein interactions for RNA: ENST00000244303.10

HIF3A-202, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2 BASIC

Gene HIF3A, Length 2,250 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-202ENST00000244303 MYH16Q9H6N6 1097 aa18.5■□□□□ 0.55
HIF3A-202ENST00000244303 NCBP3Q53F19 620 aaKnown RBP18.49■□□□□ 0.55
HIF3A-202ENST00000244303 DAXXQ9UER7 740 aaPredicted RBP18.49■□□□□ 0.55
HIF3A-202ENST00000244303 COL3A1P02461 1466 aaPredicted RBP18.48■□□□□ 0.55
HIF3A-202ENST00000244303 CDK19Q9BWU1 502 aa18.48■□□□□ 0.55
HIF3A-202ENST00000244303 CD163L1Q9NR16 1453 aa18.48■□□□□ 0.55
HIF3A-202ENST00000244303 MAPK8IP3Q9UPT6 1336 aa18.48■□□□□ 0.55
HIF3A-202ENST00000244303 U2SURPO15042 1029 aaKnown RBP18.47■□□□□ 0.55
HIF3A-202ENST00000244303 TERF2IPQ9NYB0 399 aa18.47■□□□□ 0.55
HIF3A-202ENST00000244303 AAMPQ13685 434 aa18.46■□□□□ 0.55
HIF3A-202ENST00000244303 PMFBP1Q8TBY8 1022 aa18.46■□□□□ 0.55
HIF3A-202ENST00000244303 PCDHB15Q9Y5E8 787 aa18.46■□□□□ 0.55
HIF3A-202ENST00000244303 KIF20BQ96Q89 1820 aa18.46■□□□□ 0.55
HIF3A-202ENST00000244303 PLEKHF1Q96S99 279 aa18.46■□□□□ 0.54
HIF3A-202ENST00000244303 NLRP1Q9C000 1473 aa18.45■□□□□ 0.54
HIF3A-202ENST00000244303 FYB1O15117 783 aa18.45■□□□□ 0.54
HIF3A-202ENST00000244303 DLC1Q96QB1 1528 aa18.45■□□□□ 0.54
HIF3A-202ENST00000244303 WAPLQ7Z5K2 1190 aa18.44■□□□□ 0.54
HIF3A-202ENST00000244303 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.44■□□□□ 0.54
HIF3A-202ENST00000244303 MED14O60244 1454 aa18.44■□□□□ 0.54
HIF3A-202ENST00000244303 TSR2Q969E8 191 aaKnown RBP18.44■□□□□ 0.54
HIF3A-202ENST00000244303 SETD1AO15047 1707 aaKnown RBP18.43■□□□□ 0.54
HIF3A-202ENST00000244303 TMPOP42166 694 aaKnown RBP18.43■□□□□ 0.54
HIF3A-202ENST00000244303 USP19O94966 1318 aa18.42■□□□□ 0.54
HIF3A-202ENST00000244303 HDGFL2Q7Z4V5 671 aaPredicted RBP18.42■□□□□ 0.54
HIF3A-202ENST00000244303 CABP1Q9NZU7 370 aa18.42■□□□□ 0.54
HIF3A-202ENST00000244303 NFKBIBQ15653 356 aa18.41■□□□□ 0.54
HIF3A-202ENST00000244303 TRIM35Q9UPQ4 493 aa18.41■□□□□ 0.54
HIF3A-202ENST00000244303 SEC24BO95487 1268 aa18.4■□□□□ 0.54
HIF3A-202ENST00000244303 MVPQ14764 893 aaKnown RBP18.4■□□□□ 0.54
HIF3A-202ENST00000244303 ZKSCAN2Q63HK3 967 aa18.4■□□□□ 0.54
HIF3A-202ENST00000244303 TNRQ92752 1358 aa18.4■□□□□ 0.54
HIF3A-202ENST00000244303 EXOSC9Q06265 439 aaKnown RBP18.4■□□□□ 0.54
HIF3A-202ENST00000244303 NRXN3Q9Y4C0 1643 aa18.39■□□□□ 0.54
HIF3A-202ENST00000244303 CT47B1P0C2W7 299 aaPredicted RBP18.39■□□□□ 0.54
HIF3A-202ENST00000244303 METP08581 1390 aa18.39■□□□□ 0.53
HIF3A-202ENST00000244303 HDGFP51858 240 aaKnown RBP18.39■□□□□ 0.53
HIF3A-202ENST00000244303 PDZRN3Q9UPQ7 1066 aa18.39■□□□□ 0.53
HIF3A-202ENST00000244303 FTSJ3Q8IY81 847 aaKnown RBP18.38■□□□□ 0.53
HIF3A-202ENST00000244303 DZIP1LQ8IYY4 767 aaKnown RBP18.38■□□□□ 0.53
HIF3A-202ENST00000244303 RWDD1Q9H446 243 aaPredicted RBP18.38■□□□□ 0.53
HIF3A-202ENST00000244303 SMC4Q9NTJ3 1288 aa18.38■□□□□ 0.53
HIF3A-202ENST00000244303 DIAPH1O60610 1272 aaKnown RBP18.37■□□□□ 0.53
HIF3A-202ENST00000244303 PNPLA6Q8IY17 1366 aa18.36■□□□□ 0.53
HIF3A-202ENST00000244303 RIPK4P57078 832 aa18.35■□□□□ 0.53
HIF3A-202ENST00000244303 TXNDC2Q86VQ3 553 aa18.35■□□□□ 0.53
HIF3A-202ENST00000244303 SSH1Q8WYL5 1049 aa18.35■□□□□ 0.53
HIF3A-202ENST00000244303 MAP2P11137 1827 aaKnown RBP18.35■□□□□ 0.53
HIF3A-202ENST00000244303 IL16Q14005 1332 aa18.35■□□□□ 0.53
HIF3A-202ENST00000244303 LRRC7Q96NW7 1537 aa18.34■□□□□ 0.53
HIF3A-202ENST00000244303 TRIM27P14373 513 aa18.34■□□□□ 0.53
HIF3A-202ENST00000244303 WASLO00401 505 aaPredicted RBP18.34■□□□□ 0.53
HIF3A-202ENST00000244303 TMEM2Q9UHN6 1383 aa18.33■□□□□ 0.53
HIF3A-202ENST00000244303 CDC42BPGQ6DT37 1551 aa18.33■□□□□ 0.53
HIF3A-202ENST00000244303 IL27Q8NEV9 243 aa18.33■□□□□ 0.53
HIF3A-202ENST00000244303 ATP7BP35670 1465 aa18.33■□□□□ 0.52
HIF3A-202ENST00000244303 SIRT1Q96EB6 747 aa18.33■□□□□ 0.52
HIF3A-202ENST00000244303 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.32■□□□□ 0.52
HIF3A-202ENST00000244303 PNNQ9H307 717 aaKnown RBP18.32■□□□□ 0.52
HIF3A-202ENST00000244303 ATF7IPQ6VMQ6 1270 aa18.31■□□□□ 0.52
HIF3A-202ENST00000244303 UBR1Q8IWV7 1749 aa18.31■□□□□ 0.52
HIF3A-202ENST00000244303 FBLN1P23142 703 aa18.3■□□□□ 0.52
HIF3A-202ENST00000244303 ITPRIPQ8IWB1 547 aa18.3■□□□□ 0.52
HIF3A-202ENST00000244303 RTN4Q9NQC3 1192 aaKnown RBP18.3■□□□□ 0.52
HIF3A-202ENST00000244303 NOB1Q9ULX3 412 aaKnown RBP18.3■□□□□ 0.52
HIF3A-202ENST00000244303 FAM135BQ49AJ0 1406 aa18.3■□□□□ 0.52
HIF3A-202ENST00000244303 DDX19BQ9UMR2 479 aa18.3■□□□□ 0.52
HIF3A-202ENST00000244303 TECPR2O15040 1411 aa18.29■□□□□ 0.52
HIF3A-202ENST00000244303 FCHSD2O94868 740 aa18.29■□□□□ 0.52
HIF3A-202ENST00000244303 GSE1Q14687 1217 aa18.28■□□□□ 0.52
HIF3A-202ENST00000244303 POLKQ9UBT6 870 aa18.28■□□□□ 0.52
HIF3A-202ENST00000244303 KNDC1Q76NI1 1749 aa18.28■□□□□ 0.52
HIF3A-202ENST00000244303 PPIP5K1Q6PFW1 1433 aa18.28■□□□□ 0.52
HIF3A-202ENST00000244303 FRAT2O75474 233 aaPredicted RBP18.28■□□□□ 0.52
HIF3A-202ENST00000244303 CEBPAP49715 358 aaPredicted RBP18.28■□□□□ 0.52
HIF3A-202ENST00000244303 NUDT16Q96DE0 195 aaKnown RBP18.28■□□□□ 0.52
HIF3A-202ENST00000244303 RSPH6AQ9H0K4 717 aa18.28■□□□□ 0.52
HIF3A-202ENST00000244303 UPF2Q9HAU5 1272 aaKnown RBP18.28■□□□□ 0.52
HIF3A-202ENST00000244303 CPSF1Q10570 1443 aaKnown RBP18.27■□□□□ 0.52
HIF3A-202ENST00000244303 PRKAR2BP31323 418 aa18.27■□□□□ 0.52
HIF3A-202ENST00000244303 HDAC1Q13547 482 aaPredicted RBP18.26■□□□□ 0.51
HIF3A-202ENST00000244303 BECN1Q14457 450 aa18.26■□□□□ 0.51
HIF3A-202ENST00000244303 TMEM57Q8N5G2 664 aa18.26■□□□□ 0.51
HIF3A-202ENST00000244303 KIF16BQ96L93 1317 aa18.26■□□□□ 0.51
HIF3A-202ENST00000244303 CPS1P31327 1500 aa18.26■□□□□ 0.51
HIF3A-202ENST00000244303 TBC1D32Q96NH3 1257 aa18.26■□□□□ 0.51
HIF3A-202ENST00000244303 ADAMTS13Q76LX8 1427 aa18.26■□□□□ 0.51
HIF3A-202ENST00000244303 LTKP29376 864 aa18.25■□□□□ 0.51
HIF3A-202ENST00000244303 CCDC61Q9Y6R9 512 aa18.25■□□□□ 0.51
HIF3A-202ENST00000244303 NCKAP5LQ9HCH0 1330 aa18.24■□□□□ 0.51
HIF3A-202ENST00000244303 EDC4Q6P2E9 1401 aaKnown RBP18.24■□□□□ 0.51
HIF3A-202ENST00000244303 ANO8Q9HCE9 1232 aaPredicted RBP18.24■□□□□ 0.51
HIF3A-202ENST00000244303 ROBO2Q9HCK4 1378 aa18.24■□□□□ 0.51
HIF3A-202ENST00000244303 IPO8O15397 1037 aaKnown RBP18.23■□□□□ 0.51
HIF3A-202ENST00000244303 HMOX1P09601 288 aa18.23■□□□□ 0.51
HIF3A-202ENST00000244303 ALDH1L2Q3SY69 923 aa18.23■□□□□ 0.51
HIF3A-202ENST00000244303 PLEKHG1Q9ULL1 1385 aa18.23■□□□□ 0.51
HIF3A-202ENST00000244303 DLG5Q8TDM6 1919 aa18.23■□□□□ 0.51
HIF3A-202ENST00000244303 NME9Q86XW9 330 aa18.23■□□□□ 0.51
HIF3A-202ENST00000244303 PHACTR3Q96KR7 559 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms