RNA–Protein interactions for RNA: ENST00000219281.7

USB1-201, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USB1, Length 2,282 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-201ENST00000219281 PRAM1Q96QH2 718 aa22.07■■□□□ 1.12
USB1-201ENST00000219281 RWDD1Q9H446 243 aaPredicted RBP22.06■■□□□ 1.12
USB1-201ENST00000219281 ALKQ9UM73 1620 aa22.06■■□□□ 1.12
USB1-201ENST00000219281 ZMYM3Q14202 1370 aa22.06■■□□□ 1.12
USB1-201ENST00000219281 BECN1Q14457 450 aa22.05■■□□□ 1.12
USB1-201ENST00000219281 NSD2O96028 1365 aa22.05■■□□□ 1.12
USB1-201ENST00000219281 NLRP1Q9C000 1473 aa22.05■■□□□ 1.12
USB1-201ENST00000219281 NCBP3Q53F19 620 aaKnown RBP22.04■■□□□ 1.12
USB1-201ENST00000219281 MVPQ14764 893 aaKnown RBP22.03■■□□□ 1.12
USB1-201ENST00000219281 MINK1Q8N4C8 1332 aaPredicted RBP22.03■■□□□ 1.12
USB1-201ENST00000219281 TSR2Q969E8 191 aaKnown RBP22.03■■□□□ 1.12
USB1-201ENST00000219281 ZKSCAN2Q63HK3 967 aa22.02■■□□□ 1.12
USB1-201ENST00000219281 POGKQ9P215 609 aa22.02■■□□□ 1.12
USB1-201ENST00000219281 SRPK2P78362 688 aaKnown RBP22.01■■□□□ 1.11
USB1-201ENST00000219281 FTSJ3Q8IY81 847 aaKnown RBP22.01■■□□□ 1.11
USB1-201ENST00000219281 UPF2Q9HAU5 1272 aaKnown RBP22.01■■□□□ 1.11
USB1-201ENST00000219281 RIMS2Q9UQ26 1411 aa22.01■■□□□ 1.11
USB1-201ENST00000219281 DZIP1LQ8IYY4 767 aaKnown RBP22.01■■□□□ 1.11
USB1-201ENST00000219281 U2SURPO15042 1029 aaKnown RBP22■■□□□ 1.11
USB1-201ENST00000219281 SLKQ9H2G2 1235 aaPredicted RBP22■■□□□ 1.11
USB1-201ENST00000219281 ESF1Q9H501 851 aaKnown RBP21.99■■□□□ 1.11
USB1-201ENST00000219281 EXOSC9Q06265 439 aaKnown RBP21.99■■□□□ 1.11
USB1-201ENST00000219281 TBC1D32Q96NH3 1257 aa21.99■■□□□ 1.11
USB1-201ENST00000219281 GGNBP2Q9H3C7 697 aa21.99■■□□□ 1.11
USB1-201ENST00000219281 ADGRB2O60241 1585 aa21.99■■□□□ 1.11
USB1-201ENST00000219281 A0A1W2PP64 1363 aa21.98■■□□□ 1.11
USB1-201ENST00000219281 PLEKHF1Q96S99 279 aa21.98■■□□□ 1.11
USB1-201ENST00000219281 SMC4Q9NTJ3 1288 aa21.97■■□□□ 1.11
USB1-201ENST00000219281 CT47B1P0C2W7 299 aaPredicted RBP21.97■■□□□ 1.11
USB1-201ENST00000219281 TMPOP42166 694 aaKnown RBP21.96■■□□□ 1.11
USB1-201ENST00000219281 WAPLQ7Z5K2 1190 aa21.96■■□□□ 1.11
USB1-201ENST00000219281 TRIM35Q9UPQ4 493 aa21.96■■□□□ 1.11
USB1-201ENST00000219281 ABCC11Q96J66 1382 aa21.96■■□□□ 1.11
USB1-201ENST00000219281 CDK19Q9BWU1 502 aa21.95■■□□□ 1.1
USB1-201ENST00000219281 TRIM27P14373 513 aa21.94■■□□□ 1.1
USB1-201ENST00000219281 ATAD2Q6PL18 1390 aa21.94■■□□□ 1.1
USB1-201ENST00000219281 SSH1Q8WYL5 1049 aa21.94■■□□□ 1.1
USB1-201ENST00000219281 TBC1D2Q9BYX2 928 aa21.93■■□□□ 1.1
USB1-201ENST00000219281 CD163L1Q9NR16 1453 aa21.93■■□□□ 1.1
USB1-201ENST00000219281 ANTXR1Q9H6X2 564 aa21.92■■□□□ 1.1
USB1-201ENST00000219281 ITPRIPQ8IWB1 547 aa21.92■■□□□ 1.1
USB1-201ENST00000219281 SETD1AO15047 1707 aaKnown RBP21.91■■□□□ 1.1
USB1-201ENST00000219281 FYB1O15117 783 aa21.91■■□□□ 1.1
USB1-201ENST00000219281 METP08581 1390 aa21.9■■□□□ 1.1
USB1-201ENST00000219281 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.9■■□□□ 1.1
USB1-201ENST00000219281 NOB1Q9ULX3 412 aaKnown RBP21.9■■□□□ 1.1
USB1-201ENST00000219281 COL3A1P02461 1466 aaPredicted RBP21.9■■□□□ 1.1
USB1-201ENST00000219281 TNRQ92752 1358 aa21.9■■□□□ 1.1
USB1-201ENST00000219281 ATF7IPQ6VMQ6 1270 aa21.9■■□□□ 1.1
USB1-201ENST00000219281 ANO8Q9HCE9 1232 aaPredicted RBP21.9■■□□□ 1.1
USB1-201ENST00000219281 CABP1Q9NZU7 370 aa21.9■■□□□ 1.1
USB1-201ENST00000219281 DDX19BQ9UMR2 479 aa21.9■■□□□ 1.1
USB1-201ENST00000219281 RIPK4P57078 832 aa21.89■■□□□ 1.09
USB1-201ENST00000219281 TERF2IPQ9NYB0 399 aa21.89■■□□□ 1.09
USB1-201ENST00000219281 DLC1Q96QB1 1528 aa21.89■■□□□ 1.09
USB1-201ENST00000219281 NRXN3Q9Y4C0 1643 aa21.89■■□□□ 1.09
USB1-201ENST00000219281 HDAC1Q13547 482 aaPredicted RBP21.89■■□□□ 1.09
USB1-201ENST00000219281 IL16Q14005 1332 aa21.87■■□□□ 1.09
USB1-201ENST00000219281 DIAPH1O60610 1272 aaKnown RBP21.86■■□□□ 1.09
USB1-201ENST00000219281 MFAP1P55081 439 aaKnown RBP21.86■■□□□ 1.09
USB1-201ENST00000219281 TMEM57Q8N5G2 664 aa21.86■■□□□ 1.09
USB1-201ENST00000219281 SPRYD3Q8NCJ5 442 aa21.86■■□□□ 1.09
USB1-201ENST00000219281 C22orf23Q9BZE7 217 aa21.85■■□□□ 1.09
USB1-201ENST00000219281 CEBPAP49715 358 aaPredicted RBP21.84■■□□□ 1.09
USB1-201ENST00000219281 TXNDC2Q86VQ3 553 aa21.84■■□□□ 1.09
USB1-201ENST00000219281 TMEM2Q9UHN6 1383 aa21.83■■□□□ 1.09
USB1-201ENST00000219281 HDGFP51858 240 aaKnown RBP21.82■■□□□ 1.08
USB1-201ENST00000219281 HDGFL2Q7Z4V5 671 aaPredicted RBP21.82■■□□□ 1.08
USB1-201ENST00000219281 SMC5Q8IY18 1101 aa21.82■■□□□ 1.08
USB1-201ENST00000219281 ZBTB40Q9NUA8 1239 aa21.81■■□□□ 1.08
USB1-201ENST00000219281 MED14O60244 1454 aa21.81■■□□□ 1.08
USB1-201ENST00000219281 PNNQ9H307 717 aaKnown RBP21.81■■□□□ 1.08
USB1-201ENST00000219281 IPO8O15397 1037 aaKnown RBP21.8■■□□□ 1.08
USB1-201ENST00000219281 KIF16BQ96L93 1317 aa21.8■■□□□ 1.08
USB1-201ENST00000219281 PNPLA6Q8IY17 1366 aa21.79■■□□□ 1.08
USB1-201ENST00000219281 WASLO00401 505 aaPredicted RBP21.79■■□□□ 1.08
USB1-201ENST00000219281 LTKP29376 864 aa21.79■■□□□ 1.08
USB1-201ENST00000219281 UBR1Q8IWV7 1749 aa21.78■■□□□ 1.08
USB1-201ENST00000219281 SIRT1Q96EB6 747 aa21.78■■□□□ 1.08
USB1-201ENST00000219281 ANKRD26Q9UPS8 1709 aa21.77■■□□□ 1.08
USB1-201ENST00000219281 ALDH1L2Q3SY69 923 aa21.77■■□□□ 1.08
USB1-201ENST00000219281 FCHSD2O94868 740 aa21.76■■□□□ 1.07
USB1-201ENST00000219281 FBLN1P23142 703 aa21.76■■□□□ 1.07
USB1-201ENST00000219281 PRKAR2BP31323 418 aa21.76■■□□□ 1.07
USB1-201ENST00000219281 TECPR2O15040 1411 aa21.75■■□□□ 1.07
USB1-201ENST00000219281 NUCB1Q02818 461 aa21.75■■□□□ 1.07
USB1-201ENST00000219281 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.75■■□□□ 1.07
USB1-201ENST00000219281 ADAMTS13Q76LX8 1427 aa21.75■■□□□ 1.07
USB1-201ENST00000219281 NCKAP5LQ9HCH0 1330 aa21.74■■□□□ 1.07
USB1-201ENST00000219281 FAM135BQ49AJ0 1406 aa21.74■■□□□ 1.07
USB1-201ENST00000219281 RSPH6AQ9H0K4 717 aa21.74■■□□□ 1.07
USB1-201ENST00000219281 LNPKQ9C0E8 428 aa21.73■■□□□ 1.07
USB1-201ENST00000219281 MCM4P33991 863 aa21.73■■□□□ 1.07
USB1-201ENST00000219281 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.73■■□□□ 1.07
USB1-201ENST00000219281 ATP7BP35670 1465 aa21.73■■□□□ 1.07
USB1-201ENST00000219281 CHMP5Q9NZZ3 219 aa21.72■■□□□ 1.07
USB1-201ENST00000219281 CPSF1Q10570 1443 aaKnown RBP21.72■■□□□ 1.07
USB1-201ENST00000219281 NUDT16Q96DE0 195 aaKnown RBP21.72■■□□□ 1.07
USB1-201ENST00000219281 POLKQ9UBT6 870 aa21.72■■□□□ 1.07
USB1-201ENST00000219281 LRRC7Q96NW7 1537 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms