RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ACDQ96AP0 544 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 UBXN10Q96LJ8 280 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 SPATA13Q96N96 652 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 CDADC1Q9BWV3 514 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 RNF208Q9H0X6 261 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 PRDM16Q9HAZ2 1276 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 NDFIP2Q9NV92 336 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 REV1Q9UBZ9 1251 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 ABCA12Q86UK0 2595 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 DNMBPQ6XZF7 1577 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 C17orf102A2RUQ5 167 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 AKAP10O43572 662 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 CLPTM1O96005 669 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 ICAM2P13598 275 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 OR1G1P47890 313 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 ORC1Q13415 861 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 BMPR2Q13873 1038 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 PCBP1Q15365 356 aaKnown RBP eCLIP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 KCTD19Q17RG1 926 aaPredicted RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 TIGD2Q4W5G0 525 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 C12orf60Q5U649 245 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 CCSAPQ6IQ19 270 aaPredicted RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 PDE12Q6L8Q7 609 aaKnown RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 C3P1Q6ZMU1 363 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 COMMD2Q86X83 199 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 LRRN4CLQ8ND94 238 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 RBM41Q96IZ5 413 aaKnown RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 EXOC2Q96KP1 924 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 SMAD5Q99717 465 aaKnown RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 ESYT1Q9BSJ8 1104 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 FICDQ9BVA6 458 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 OSBPL11Q9BXB4 747 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 POPDC2Q9HBU9 364 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 PRDM8Q9NQV8 689 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 SLC39A9Q9NUM3 307 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 ADGRL1O94910 1474 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 A0A1W2PQ72 361 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 ANKRD28O15084 1053 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 PRIM2P49643 509 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 PSME3P61289 254 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 SLFN5Q08AF3 891 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 BTG3Q14201 252 aaPredicted RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 SLC39A14Q15043 492 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 LLGL1Q15334 1064 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 SEC23AQ15436 765 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 PGBD2Q6P3X8 592 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 ALKBH8Q96BT7 664 aaKnown RBP2.84□□□□□ -1.96
SCN1A-219ENST00000641575 TSPAN17Q96FV3 270 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 ATP6V1G3Q96LB4 118 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 PARD6BQ9BYG5 372 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 RETREG1Q9H6L5 497 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 SLC2A4RGQ9NR83 387 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 DCTN4Q9UJW0 460 aa2.84□□□□□ -1.96
SCN1A-219ENST00000641575 WDR62O43379 1518 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ANKRD50Q9ULJ7 1429 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 LAMTOR5O43504 91 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RGS10O43665 173 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 BUB1O43683 1085 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SGTAO43765 313 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ANXA5P08758 320 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CLUP10909 449 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PSMC2P35998 433 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 C1QBPQ07021 282 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MYBPC2Q14324 1141 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NFE2L1Q14494 772 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 HIC1Q14526 733 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 EMC2Q15006 297 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SPESP1Q6UW49 350 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 KDELC1Q6UW63 502 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TMPPEQ6ZT21 453 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RASGRP2Q7LDG7 609 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PSTKQ8IV42 348 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 BLIDQ8IZY5 108 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PYROXD1Q8WU10 500 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 BORCS6Q96GS4 357 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TRAPPC9Q96Q05 1148 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 WRNIP1Q96S55 665 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 C1orf50Q9BV19 199 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 DPH3P1Q9H4G8 78 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 LATS2Q9NRM7 1088 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MCUBQ9NWR8 336 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF222Q9UK12 451 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TTC7AQ9ULT0 858 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CDYLQ9Y232 598 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PDS5AQ29RF7 1337 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 A0A096LPK6 155 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 IDSB3KWA1 339 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 F8W810 466 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 APOL3O95236 402 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TXNDC12O95881 172 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 FGF4P08620 206 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ALOX12P18054 663 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 IDSP22304 550 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 FSHRP23945 695 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RPL3P39023 403 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SLC26A2P50443 739 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MARSP56192 900 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RPS8P62241 208 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TFCP2Q12800 502 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SLC15A2Q16348 729 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms