RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 Q5PR19 223 aa4.66□□□□□ -1.66
CD44-239ENST00000639002 ZNF324BQ6AW86 544 aaPredicted RBP4.66□□□□□ -1.66
CD44-239ENST00000639002 PARM1Q6UWI2 310 aa4.66□□□□□ -1.66
CD44-239ENST00000639002 CYB5R4Q7L1T6 521 aa4.66□□□□□ -1.66
CD44-239ENST00000639002 KDELC2Q7Z4H8 507 aa4.66□□□□□ -1.66
CD44-239ENST00000639002 CLEC18CQ8NCF0 446 aa4.66□□□□□ -1.66
CD44-239ENST00000639002 SPATA3Q8NHX4 192 aa4.66□□□□□ -1.66
CD44-239ENST00000639002 MECRQ9BV79 373 aa4.66□□□□□ -1.66
CD44-239ENST00000639002 STK33Q9BYT3 514 aa4.66□□□□□ -1.66
CD44-239ENST00000639002 TASP1Q9H6P5 420 aa4.66□□□□□ -1.66
CD44-239ENST00000639002 FBXO4Q9UKT5 387 aa4.66□□□□□ -1.66
CD44-239ENST00000639002 SLC8A2Q9UPR5 921 aa4.66□□□□□ -1.66
CD44-239ENST00000639002 ZBTB1Q9Y2K1 713 aa4.66□□□□□ -1.66
CD44-239ENST00000639002 PIP5K1BO14986 540 aa4.65□□□□□ -1.67
CD44-239ENST00000639002 NPPBP16860 134 aa4.65□□□□□ -1.67
CD44-239ENST00000639002 MLH1P40692 756 aa4.65□□□□□ -1.67
CD44-239ENST00000639002 ADPRHP54922 357 aa4.65□□□□□ -1.67
CD44-239ENST00000639002 SLC4A8Q2Y0W8 1093 aa4.65□□□□□ -1.67
CD44-239ENST00000639002 INO80DQ53TQ3 878 aaPredicted RBP4.65□□□□□ -1.67
CD44-239ENST00000639002 SPATA2LQ8IUW3 424 aaPredicted RBP4.65□□□□□ -1.67
CD44-239ENST00000639002 C7orf57Q8NEG2 295 aa4.65□□□□□ -1.67
CD44-239ENST00000639002 CLEC4CQ8WTT0 213 aa4.65□□□□□ -1.67
CD44-239ENST00000639002 ADAD1Q96M93 576 aaKnown RBP4.65□□□□□ -1.67
CD44-239ENST00000639002 PLAC1Q9HBJ0 212 aa4.65□□□□□ -1.67
CD44-239ENST00000639002 ZNF304Q9HCX3 659 aa4.65□□□□□ -1.67
CD44-239ENST00000639002 TRPC5Q9UL62 973 aaPredicted RBP4.65□□□□□ -1.67
CD44-239ENST00000639002 SLC39A10Q9ULF5 831 aa4.65□□□□□ -1.67
CD44-239ENST00000639002 KIF28PB7ZC32 967 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 INAFM1C9JVW0 142 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 KIF3BO15066 747 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 DNPH1O43598 174 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 KLKB1P03952 638 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 ALDOAP04075 364 aaKnown RBP4.64□□□□□ -1.67
CD44-239ENST00000639002 RASSF2P50749 326 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 POLE2P56282 527 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 ZBTB16Q05516 673 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 PMPCAQ10713 525 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 C10orf76Q5T2E6 689 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 SLC16A12Q6ZSM3 486 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 CCAR1Q8IX12 1150 aaKnown RBP4.64□□□□□ -1.67
CD44-239ENST00000639002 PRR26Q8N8Z3 221 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 KDM1BQ8NB78 822 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 ADPRHL1Q8NDY3 354 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 ENGASEQ8NFI3 743 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 NUDCD2Q8WVJ2 157 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 REXO5Q96IC2 774 aaKnown RBP4.64□□□□□ -1.67
CD44-239ENST00000639002 FAM84BQ96KN1 310 aaPredicted RBP4.64□□□□□ -1.67
CD44-239ENST00000639002 MEIS3Q99687 375 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 SF3B5Q9BWJ5 86 aaKnown RBP4.64□□□□□ -1.67
CD44-239ENST00000639002 FRMD8Q9BZ67 464 aaPredicted RBP4.64□□□□□ -1.67
CD44-239ENST00000639002 CERS4Q9HA82 394 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 SELENONQ9NZV5 590 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 TBC1D14Q9P2M4 693 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 PHTF1Q9UMS5 762 aa4.64□□□□□ -1.67
CD44-239ENST00000639002 EME2A4GXA9 379 aaPredicted RBP4.63□□□□□ -1.67
CD44-239ENST00000639002 C3orf70A6NLC5 250 aaPredicted RBP4.63□□□□□ -1.67
CD44-239ENST00000639002 LCATP04180 440 aa4.63□□□□□ -1.67
CD44-239ENST00000639002 ACAA1P09110 424 aaPredicted RBP4.63□□□□□ -1.67
CD44-239ENST00000639002 GRK5P34947 590 aa4.63□□□□□ -1.67
CD44-239ENST00000639002 GNALP38405 381 aa4.63□□□□□ -1.67
CD44-239ENST00000639002 Q0VFX4 171 aa4.63□□□□□ -1.67
CD44-239ENST00000639002 ASIC2Q16515 512 aa4.63□□□□□ -1.67
CD44-239ENST00000639002 RINT1Q6NUQ1 792 aa4.63□□□□□ -1.67
CD44-239ENST00000639002 TMEM88Q6PEY1 159 aa4.63□□□□□ -1.67
CD44-239ENST00000639002 C11orf96Q7Z7L8 435 aa4.63□□□□□ -1.67
CD44-239ENST00000639002 CCDC138Q96M89 665 aa4.63□□□□□ -1.67
CD44-239ENST00000639002 WDR77Q9BQA1 342 aaPredicted RBP4.63□□□□□ -1.67
CD44-239ENST00000639002 CCDC134Q9H6E4 229 aa4.63□□□□□ -1.67
CD44-239ENST00000639002 PLK2Q9NYY3 685 aa4.63□□□□□ -1.67
CD44-239ENST00000639002 TNFSF13BQ9Y275 285 aa4.63□□□□□ -1.67
CD44-239ENST00000639002 DTX4Q9Y2E6 619 aa4.63□□□□□ -1.67
CD44-239ENST00000639002 CEP83Q9Y592 693 aa4.63□□□□□ -1.67
CD44-239ENST00000639002 A0A1B0GVT2 93 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 FAM90A18PA6NE21 464 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 GAGE12JA6NER3 117 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 FAM90A16PA6NEW6 464 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 FAM90A9PA6NNJ1 464 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 FAM90A5PA8MXJ8 464 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 MCIDASD6RGH6 385 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 I6L893 689 aaPredicted RBP4.62□□□□□ -1.67
CD44-239ENST00000639002 MSI1O43347 362 aaKnown RBP4.62□□□□□ -1.67
CD44-239ENST00000639002 RGS14O43566 566 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 FAM90A15PP0C7V4 464 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 FAM90A14PP0C7W9 464 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 ALDH18A1P54886 795 aaKnown RBP4.62□□□□□ -1.67
CD44-239ENST00000639002 RBM6P78332 1123 aaKnown RBP4.62□□□□□ -1.67
CD44-239ENST00000639002 ABATP80404 500 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 KEAP1Q14145 624 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 KSR2Q6VAB6 950 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.62□□□□□ -1.67
CD44-239ENST00000639002 OR1N1Q8NGS0 311 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 FAM110DQ8TAY7 271 aaPredicted RBP4.62□□□□□ -1.67
CD44-239ENST00000639002 WDR60Q8WVS4 1066 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 MED30Q96HR3 178 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.62□□□□□ -1.67
CD44-239ENST00000639002 TP63Q9H3D4 680 aaPredicted RBP4.62□□□□□ -1.67
CD44-239ENST00000639002 ICKQ9UPZ9 632 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 LZTS1Q9Y250 596 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 PTGDR2Q9Y5Y4 395 aa4.62□□□□□ -1.67
CD44-239ENST00000639002 COPG1Q9Y678 874 aaKnown RBP4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms