RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 ZNF446Q9NWS9 450 aa10.4□□□□□ -0.74
UPF1-213ENST00000601981 ARHGEF38Q9NXL2 777 aa10.4□□□□□ -0.74
UPF1-213ENST00000601981 MARK1Q9P0L2 795 aa10.4□□□□□ -0.74
UPF1-213ENST00000601981 CA14Q9ULX7 337 aa10.4□□□□□ -0.74
UPF1-213ENST00000601981 FAM187AA6NFU0 413 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 NEDD8-MDP1E9PL57 170 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 SPECC1L-ADORA2AF8WAN1 911 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 PI4K2BG5E9Z4 385 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 STK25O00506 426 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 NCAM2O15394 837 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 HOXC11O43248 304 aaPredicted RBP10.39□□□□□ -0.75
UPF1-213ENST00000601981 PRPSAP2O60256 369 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 LRCH4O75427 683 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 KRT1P04264 644 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 CTHP32929 405 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 GJA4P35212 333 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 EIF2DP41214 584 aaKnown RBP10.39□□□□□ -0.75
UPF1-213ENST00000601981 SLC7A5Q01650 507 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 EFHC2Q5JST6 749 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 MPP7Q5T2T1 576 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 OTUD1Q5VV17 481 aaPredicted RBP10.39□□□□□ -0.75
UPF1-213ENST00000601981 DAB2IPQ5VWQ8 1189 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 TRNP1Q6NT89 227 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 CCNI2Q6ZMN8 369 aaPredicted RBP10.39□□□□□ -0.75
UPF1-213ENST00000601981 TRIM67Q6ZTA4 783 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 TPGS1Q6ZTW0 290 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 BNIPLQ7Z465 357 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 FAM131BQ86XD5 332 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 SIX5Q8N196 739 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 TTC8Q8TAM2 541 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.39□□□□□ -0.756e-6■■■■■ 28.1
UPF1-213ENST00000601981 WBP2Q969T9 261 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 NTAN1Q96AB6 310 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 TMA16Q96EY4 203 aaKnown RBP10.39□□□□□ -0.75
UPF1-213ENST00000601981 HAPLN3Q96S86 360 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 NELL2Q99435 816 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 EPHX3Q9H6B9 360 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 HOMER3Q9NSC5 361 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 PCYOX1Q9UHG3 505 aa10.39□□□□□ -0.75
UPF1-213ENST00000601981 ARIH1Q9Y4X5 557 aaPredicted RBP10.39□□□□□ -0.75
UPF1-213ENST00000601981 COL4A3Q01955 1670 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 TECTAO75443 2155 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 PAGE1O75459 146 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 SEC31AO94979 1220 aaKnown RBP10.38□□□□□ -0.75
UPF1-213ENST00000601981 RARAP10276 462 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 TYRP14679 529 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 TCF4P15884 667 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 TFE3P19532 575 aaPredicted RBP10.38□□□□□ -0.75
UPF1-213ENST00000601981 TACR2P21452 398 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 ADRA1BP35368 520 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 GJC1P36383 396 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 VCPP55072 806 aaKnown RBP10.38□□□□□ -0.75
UPF1-213ENST00000601981 HDAC4P56524 1084 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 DR1Q01658 176 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 GUCY2DQ02846 1103 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 GRSF1Q12849 480 aaKnown RBP eCLIP10.38□□□□□ -0.75
UPF1-213ENST00000601981 KLF1Q13351 362 aaPredicted RBP10.38□□□□□ -0.75
UPF1-213ENST00000601981 CUL1Q13616 776 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 E2F5Q15329 346 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 FAM133BQ5BKY9 247 aaKnown RBP10.38□□□□□ -0.75
UPF1-213ENST00000601981 MS4A13Q5J8X5 152 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 RAP1GAP2Q684P5 730 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 RHBDF2Q6PJF5 856 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 ADAT2Q7Z6V5 191 aaKnown RBP10.38□□□□□ -0.75
UPF1-213ENST00000601981 TMEM25Q86YD3 366 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 PSTKQ8IV42 348 aaKnown RBP10.38□□□□□ -0.75
UPF1-213ENST00000601981 CCDC50Q8IVM0 306 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 LGI2Q8N0V4 545 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 ARFGAP1Q8N6T3 406 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 AENQ8WTP8 325 aaKnown RBP10.38□□□□□ -0.75
UPF1-213ENST00000601981 SEC14L1Q92503 715 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 FAM3CQ92520 227 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 MAGOHBQ96A72 148 aaKnown RBP10.38□□□□□ -0.75
UPF1-213ENST00000601981 C1orf74Q96LT6 269 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 RPRD1AQ96P16 312 aaPredicted RBP10.38□□□□□ -0.75
UPF1-213ENST00000601981 P2RY13Q9BPV8 354 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 LRFN3Q9BTN0 628 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 SLC2A11Q9BYW1 496 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 OSBPL8Q9BZF1 889 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 SIK2Q9H0K1 926 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 RAB17Q9H0T7 212 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 LRRC19Q9H756 370 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 DEC1Q9P2X7 70 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 AMACRQ9UHK6 382 aa10.38□□□□□ -0.75
UPF1-213ENST00000601981 MYO18AQ92614 2054 aaKnown RBP10.37□□□□□ -0.75
UPF1-213ENST00000601981 TCRBV7S2A1N4TA0A589 114 aa10.37□□□□□ -0.75
UPF1-213ENST00000601981 KANSL1LA0AUZ9 987 aa10.37□□□□□ -0.75
UPF1-213ENST00000601981 TMEM221A6NGB7 291 aa10.37□□□□□ -0.75
UPF1-213ENST00000601981 M0R296 226 aa10.37□□□□□ -0.75
UPF1-213ENST00000601981 TTI1O43156 1089 aa10.37□□□□□ -0.75
UPF1-213ENST00000601981 CACNG3O60359 315 aa10.37□□□□□ -0.75
UPF1-213ENST00000601981 TSPAN3O60637 253 aa10.37□□□□□ -0.75
UPF1-213ENST00000601981 TBL1XO60907 577 aa10.37□□□□□ -0.75
UPF1-213ENST00000601981 PENKP01210 267 aaPredicted RBP10.37□□□□□ -0.75
UPF1-213ENST00000601981 APODP05090 189 aa10.37□□□□□ -0.75
UPF1-213ENST00000601981 MYBL2P10244 700 aa10.37□□□□□ -0.75
UPF1-213ENST00000601981 DRD1P21728 446 aa10.37□□□□□ -0.75
UPF1-213ENST00000601981 MIPP30301 263 aa10.37□□□□□ -0.75
UPF1-213ENST00000601981 COILP38432 576 aaPredicted RBP10.37□□□□□ -0.75
UPF1-213ENST00000601981 ZNF135P52742 658 aaPredicted RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms