RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 RTL3Q8N8U3 475 aaKnown RBP14.55□□□□□ -0.08
LIG3-205ENST00000585941 GSDMBQ8TAX9 411 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 DCAKDQ8WVC6 231 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 OVCA2Q8WZ82 227 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 BTN2A3PQ96KV6 586 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 TTLL2Q9BWV7 592 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 UBE2OQ9C0C9 1292 aaKnown RBP14.55□□□□□ -0.08
LIG3-205ENST00000585941 GBA3Q9H227 469 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 HCSTQ9UBK5 93 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 ZNF180Q9UJW8 692 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 GGA2Q9UJY4 613 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 MAD1L1Q9Y6D9 718 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 CDY1Q9Y6F8 540 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 E9PAM4 449 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 KCNK1O00180 336 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 SUN1O94901 812 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 ZDHHC11BP0C7U3 371 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 DNAJB2P25686 324 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 CCT5P48643 541 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 TUBP50607 506 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 DUSP4Q13115 394 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 PRPSAP1Q14558 356 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 FBXO46Q6PJ61 603 aaPredicted RBP14.55□□□□□ -0.08
LIG3-205ENST00000585941 MICALCLQ6ZW33 695 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 TAS1R1Q7RTX1 841 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 CPLX4Q7Z7G2 160 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 SLC26A11Q86WA9 606 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 TMEM173Q86WV6 379 aaPredicted RBP14.55□□□□□ -0.08
LIG3-205ENST00000585941 LRRC6Q86X45 466 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 AGGF1Q8N302 714 aaeCLIP14.55□□□□□ -0.08
LIG3-205ENST00000585941 ATPAF2Q8N5M1 289 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 PDZD8Q8NEN9 1154 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 BCL7CQ8WUZ0 217 aaPredicted RBP14.55□□□□□ -0.08
LIG3-205ENST00000585941 TOP1MTQ969P6 601 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 STAMBPL1Q96FJ0 436 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 TEKT5Q96M29 485 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 ZNF558Q96NG5 402 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 NSRP1Q9H0G5 558 aaKnown RBP14.55□□□□□ -0.08
LIG3-205ENST00000585941 MARCH2Q9P0N8 246 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 PPARGC1AQ9UBK2 798 aaKnown RBP14.55□□□□□ -0.08
LIG3-205ENST00000585941 RSPH14Q9UHP6 348 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 SLC27A5Q9Y2P5 690 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 TTLL3Q9Y4R7 772 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 PCDHA11Q9Y5I1 949 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 HS3ST4Q9Y661 456 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 DOCK4Q8N1I0 1966 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 SLC38A8A6NNN8 435 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 VNN2O95498 520 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 AP2A1O95782 977 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 PBX3P40426 434 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 GJA8P48165 433 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 EFEMP1Q12805 493 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 MTM1Q13496 603 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 KBTBD12Q3ZCT8 623 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 C10orf120Q5SQS8 335 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 STEAP4Q687X5 459 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 TPGS2Q68CL5 300 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 ZNF449Q6P9G9 518 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 PRSS55Q6UWB4 352 aaPredicted RBP14.54□□□□□ -0.08
LIG3-205ENST00000585941 UNC5AQ6ZN44 842 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 TP53INP2Q8IXH6 220 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 ARMC5Q96C12 935 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 ZNF317Q96PQ6 595 aaPredicted RBP14.54□□□□□ -0.08
LIG3-205ENST00000585941 PRMT1Q99873 361 aaKnown RBP14.54□□□□□ -0.08
LIG3-205ENST00000585941 AFF4Q9UHB7 1163 aaKnown RBP14.54□□□□□ -0.08
LIG3-205ENST00000585941 NR2E3Q9Y5X4 410 aa14.54□□□□□ -0.08
LIG3-205ENST00000585941 WDR27A2RRH5 827 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 ARHGAP42A6NI28 874 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 KRT37O76014 449 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 MOCS2O96007 188 aaPredicted RBP14.53□□□□□ -0.08
LIG3-205ENST00000585941 IGLV3-27P01718 113 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 SOD2P04179 222 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 CREB1P16220 341 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 RHOQP17081 205 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 PGAM1P18669 254 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 NDST2P52849 883 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 IL9RQ01113 521 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 NAB1Q13506 487 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 SPOUT1Q5T280 376 aaKnown RBP14.53□□□□□ -0.08
LIG3-205ENST00000585941 AFMIDQ63HM1 303 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 ARHGAP12Q8IWW6 846 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 CMTR2Q8IYT2 770 aaKnown RBP14.53□□□□□ -0.08
LIG3-205ENST00000585941 NETO2Q8NC67 525 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 DPF3Q92784 378 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 FATE1Q969F0 183 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 ZNF689Q96CS4 500 aaPredicted RBP14.53□□□□□ -0.08
LIG3-205ENST00000585941 FAM107BQ9H098 131 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 CRISPLD1Q9H336 500 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 C11orf49Q9H6J7 331 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 NUDT5Q9UKK9 219 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 HBS1LQ9Y450 684 aaKnown RBP14.53□□□□□ -0.08
LIG3-205ENST00000585941 BRCA2P51587 3418 aa14.53□□□□□ -0.08
LIG3-205ENST00000585941 FAM159BA6NKW6 160 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 DFFAO00273 331 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 MATN3O15232 486 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 ZBTB24O43167 697 aaPredicted RBP14.52□□□□□ -0.08
LIG3-205ENST00000585941 SOAT2O75908 522 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 FAM155BO75949 473 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 ZWINTO95229 277 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 TIMP1P01033 207 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms