RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 WDR83Q9BRX9 315 aaKnown RBP4.62□□□□□ -1.67
SMCHD1-208ENST00000583344 NUP62CLQ9H1M0 184 aa4.62□□□□□ -1.67
SMCHD1-208ENST00000583344 VPS33BQ9H267 617 aa4.62□□□□□ -1.67
SMCHD1-208ENST00000583344 OBP2AQ9NY56 170 aa4.62□□□□□ -1.67
SMCHD1-208ENST00000583344 PCDHA7Q9UN72 937 aa4.62□□□□□ -1.67
SMCHD1-208ENST00000583344 GRIN2AQ12879 1464 aa4.62□□□□□ -1.67
SMCHD1-208ENST00000583344 ERCC6L2Q5T890 1561 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 HECW2Q9P2P5 1572 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 TRPM1Q7Z4N2 1603 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 RHODO00212 210 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 KPNA5O15131 536 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 KCNQ3O43525 872 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 RFPL3SP0C7P2 107 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 FGFR2P21802 821 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 CIITAP33076 1130 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 TBX4P57082 545 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 ZNF543Q08ER8 600 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 GFOD2Q3B7J2 385 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 GLE1Q53GS7 698 aaKnown RBP4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 ARHGAP15Q53QZ3 475 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 KIAA0408Q6ZU52 694 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 CENPQQ7L2Z9 268 aaPredicted RBP4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 C14orf80Q86SX3 495 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 CCDC33Q8N5R6 958 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 TMEM174Q8WUU8 243 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 GLMPQ8WWB7 406 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 OVCA2Q8WZ82 227 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 INPP5DQ92835 1189 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 ATP2A3Q93084 1043 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 TIFAQ96CG3 184 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 LMLNQ96KR4 655 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 EIF3CQ99613 913 aaKnown RBP4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 MAGEB5Q9BZ81 275 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 PCDHAC1Q9H158 963 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 RXFP3Q9NSD7 469 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 ZMYND8Q9ULU4 1186 aaPredicted RBP4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 LAMP3Q9UQV4 416 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 B3GNT3Q9Y2A9 372 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 NUP160Q12769 1436 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 C9orf84Q5VXU9 1444 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 PRAG1Q86YV5 1406 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 ATP10BO94823 1461 aa4.61□□□□□ -1.67
SMCHD1-208ENST00000583344 EME2A4GXA9 379 aaPredicted RBP4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 DPPA5A6NC42 116 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 GOLGA6CA6NDK9 693 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 GOLGA6BA6NDN3 693 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 POM121BA6NF01 834 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 AREL1O15033 823 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 GOLGA6DP0CG33 693 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 PECAM1P16284 738 aaPredicted RBP4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 PIK3CBP42338 1070 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 HYAL1Q12794 435 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 ATP1A4Q13733 1029 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 KIAA1755Q5JYT7 1200 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 LCE1EQ5T753 118 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 ISM2Q6H9L7 571 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 HMBOX1Q6NT76 420 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 TLDC1Q6P9B6 456 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 LRIG3Q6UXM1 1119 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 SPATA2LQ8IUW3 424 aaPredicted RBP4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 GRAMD1AQ96CP6 724 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 MEIS3Q99687 375 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 NTPCRQ9BSD7 190 aaKnown RBP4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 SF3B5Q9BWJ5 86 aaKnown RBP4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 PANK3Q9H999 370 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 ERVK-5Q9HDB9 667 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 GOLGA6AQ9NYA3 693 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 SELENONQ9NZV5 590 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 NPC1L1Q9UHC9 1359 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 SYNJ2O15056 1496 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 MAGI1Q96QZ7 1491 aaPredicted RBP4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 ABCA8O94911 1581 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 CDC42BPAQ5VT25 1732 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 TSPOAP1O95153 1857 aa4.6□□□□□ -1.67
SMCHD1-208ENST00000583344 RPS10-NUDT3A0A1W2PQS6 291 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 IFITM10A6NMD0 228 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 CYSRT1A8MQ03 144 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 PQBP1O60828 265 aaKnown RBP4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 KAT7O95251 611 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 SGPL1O95470 568 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 NDST3O95803 873 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 MYL4P12829 197 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 TSHRP16473 764 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 PRDM15P57071 1507 aaPredicted RBP4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 TMF1P82094 1093 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 PLA2R1Q13018 1463 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 CAPRIN2Q6IMN6 1127 aaKnown RBP4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 PLB1Q6P1J6 1458 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 SKAP1Q86WV1 359 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 WDR75Q8IWA0 830 aaKnown RBP4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 IQCF1Q8N6M8 205 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 RNF152Q8N8N0 203 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 CCDC150Q8NCX0 1101 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 TTC8Q8TAM2 541 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 NUDCD2Q8WVJ2 157 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 PMM1Q92871 262 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 MED30Q96HR3 178 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms