RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ANKRD20A2Q5SQ80 823 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 C9orf50Q5SZB4 431 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 CEP85LQ5SZL2 805 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 SYCP2LQ5T4T6 812 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 ANKRD20A1Q5TYW2 823 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 ANKRD20A3Q5VUR7 823 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 NUGGCQ68CJ6 796 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 LILRA6Q6PI73 481 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 C4orf22Q6V702 233 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 ARHGEF18Q6ZSZ5 1173 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 TRMT10CQ7L0Y3 403 aaKnown RBP10.81□□□□□ -0.68
SS18-217ENST00000580958 ITIH5Q86UX2 942 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 CHSY1Q86X52 802 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 PLPP6Q8IY26 295 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 ZNF683Q8IZ20 524 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 UHMK1Q8TAS1 419 aaKnown RBP10.81□□□□□ -0.68
SS18-217ENST00000580958 POF1BQ8WVV4 589 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 PSMG2Q969U7 264 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 ARL8AQ96BM9 186 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 P2RY11Q96G91 374 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 BTN2A3PQ96KV6 586 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 C1orf74Q96LT6 269 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 SPATA13Q96N96 652 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 RBM15Q96T37 977 aaKnown RBP eCLIP10.81□□□□□ -0.68
SS18-217ENST00000580958 EMILIN2Q9BXX0 1053 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 CEP41Q9BYV8 373 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 ETNK1Q9HBU6 452 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 MED4Q9NPJ6 270 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 MPP6Q9NZW5 540 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 UXTQ9UBK9 157 aaPredicted RBP10.81□□□□□ -0.68
SS18-217ENST00000580958 RWDD3Q9Y3V2 267 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 MYLKQ15746 1914 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 GOLGA6L7A0A1B0GV03 622 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 C2orf71A6NGG8 1288 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 HIDE1A8MVS5 230 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 F5H423 210 aaPredicted RBP10.8□□□□□ -0.68
SS18-217ENST00000580958 SMAPO00193 183 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 CHADO15335 359 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 NCAM2O15394 837 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 RRP9O43818 475 aaKnown RBP10.8□□□□□ -0.68
SS18-217ENST00000580958 BANF1O75531 89 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 CNTN5O94779 1100 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 STK10O94804 968 aaKnown RBP10.8□□□□□ -0.68
SS18-217ENST00000580958 ACSL3O95573 720 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 LRG1P02750 347 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 F11P03951 625 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 TACR2P21452 398 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 GARSP41250 739 aaKnown RBP10.8□□□□□ -0.68
SS18-217ENST00000580958 IRAK1P51617 712 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 ARL4CP56559 192 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 PPIDQ08752 370 aaKnown RBP10.8□□□□□ -0.68
SS18-217ENST00000580958 ZNF844Q08AG5 666 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 IFFO1Q0D2I5 559 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 WASHC5Q12768 1159 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 KYNUQ16719 465 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 FNBP1LQ5T0N5 605 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 NADSYN1Q6IA69 706 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 KLHDC10Q6PID8 442 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 LRRC31Q6UY01 552 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 ARHGAP36Q6ZRI8 547 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 CCDC149Q6ZUS6 474 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 TMEM150AQ86TG1 271 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 ARHGAP12Q8IWW6 846 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 CCDC13Q8IYE1 715 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 GOLGA6L1Q8N7Z2 621 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 RTL3Q8N8U3 475 aaKnown RBP10.8□□□□□ -0.68
SS18-217ENST00000580958 KREMEN2Q8NCW0 462 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 IGSF8Q969P0 613 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 HDAC11Q96DB2 347 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 C9orf72Q96LT7 481 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 PRMT1Q99873 361 aaKnown RBP10.8□□□□□ -0.68
SS18-217ENST00000580958 FERMT1Q9BQL6 677 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 SLC39A8Q9C0K1 460 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 BRD8Q9H0E9 1235 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 IL21Q9HBE4 155 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 LRRC4CQ9HCJ2 640 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 NDFIP2Q9NV92 336 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 ASB3Q9Y575 518 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 MYOFQ9NZM1 2061 aa10.8□□□□□ -0.68
SS18-217ENST00000580958 MYO9BQ13459 2157 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 C2orf78A6NCI8 922 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 WASH4PA8MWX3 477 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 GOLGA8KD6RF30 607 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 KCNK1O00180 336 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 DFFAO00273 331 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 GRM6O15303 877 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 POLR3GO15318 223 aaPredicted RBP10.79□□□□□ -0.68
SS18-217ENST00000580958 EIF3HO15372 352 aaKnown RBP eCLIP10.79□□□□□ -0.68
SS18-217ENST00000580958 ACSL4O60488 711 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 LPXNO60711 386 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 OPHN1O60890 802 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 RNF40O75150 1001 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 ZNF189O75820 626 aaPredicted RBP10.79□□□□□ -0.68
SS18-217ENST00000580958 TTC4O95801 387 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 GLUD1P00367 558 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 OAS1P00973 400 aaKnown RBP10.79□□□□□ -0.68
SS18-217ENST00000580958 SHBGP04278 402 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 C8AP07357 584 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 NUDT17P0C025 328 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 IRF1P10914 325 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms