RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 MATKP42679 507 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 IL12RB1P42701 662 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 NSFP46459 744 aaKnown RBP8.38□□□□□ -1.07
VPS53-214ENST00000572607 DHPSP49366 369 aaPredicted RBP8.38□□□□□ -1.07
VPS53-214ENST00000572607 SULT1E1P49888 294 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 OXCT1P55809 520 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 ST8SIA6P61647 398 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 CREB5Q02930 508 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 NCAPHQ15003 741 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 KLHL40Q2TBA0 621 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 AASDHQ4L235 1098 aaPredicted RBP8.38□□□□□ -1.07
VPS53-214ENST00000572607 FNDC3BQ53EP0 1204 aaKnown RBP8.38□□□□□ -1.07
VPS53-214ENST00000572607 TTC39BQ5VTQ0 682 aaPredicted RBP8.38□□□□□ -1.07
VPS53-214ENST00000572607 NAA35Q5VZE5 725 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 RNF219Q5W0B1 726 aaPredicted RBP8.38□□□□□ -1.07
VPS53-214ENST00000572607 RAP1GAP2Q684P5 730 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 PMS2CLQ68D20 193 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 MBLAC2Q68D91 279 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 NADSYN1Q6IA69 706 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 PRR23CQ6ZRP0 262 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 CYP2U1Q7Z449 544 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 LGI2Q8N0V4 545 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.38□□□□□ -1.07
VPS53-214ENST00000572607 OLIG1Q8TAK6 271 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 ERGIC2Q96RQ1 377 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 PPP1R9BQ96SB3 815 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 RTKNQ9BST9 563 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 NUCKS1Q9H1E3 243 aaKnown RBP8.38□□□□□ -1.07
VPS53-214ENST00000572607 DUSP15Q9H1R2 295 aaPredicted RBP8.38□□□□□ -1.07
VPS53-214ENST00000572607 VPS45Q9NRW7 570 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 SEPT11Q9NVA2 429 aaKnown RBP8.38□□□□□ -1.07
VPS53-214ENST00000572607 CALCOCO1Q9P1Z2 691 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 CDV3Q9UKY7 258 aaKnown RBP8.38□□□□□ -1.07
VPS53-214ENST00000572607 CLEC4EQ9ULY5 219 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 SIK3Q9Y2K2 1263 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 RAD54BQ9Y620 910 aa8.38□□□□□ -1.07
VPS53-214ENST00000572607 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.38□□□□□ -1.07
VPS53-214ENST00000572607 FAM208BQ5VWN6 2430 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 SYCE3A1L190 88 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 ANKRD62A6NC57 917 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 LRRC10BA6NIK2 292 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 GOLGA6L19H0YKK7 550 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 SLC30A4O14863 429 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 LUC7L3O95232 432 aaKnown RBP8.37□□□□□ -1.07
VPS53-214ENST00000572607 CAVIN2O95810 425 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 SERPINC1P01008 464 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 ASLP04424 464 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 ACADMP11310 421 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 FERP16591 822 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 DESP17661 470 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 NDUFV2P19404 249 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 CD70P32970 193 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 MPLP40238 635 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 GABRB2P47870 512 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 SGSHP51688 502 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 JAM2P57087 298 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 RPS24P62847 133 aaKnown RBP8.37□□□□□ -1.07
VPS53-214ENST00000572607 NOMO3P69849 1222 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 RPL6Q02878 288 aaKnown RBP8.37□□□□□ -1.07
VPS53-214ENST00000572607 DEUP1Q05D60 604 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 ZNF234Q14588 700 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 MAP7D1Q3KQU3 841 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 SPDYCQ5MJ68 293 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 BRMS1LQ5PSV4 323 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 ACBD5Q5T8D3 534 aaPredicted RBP8.37□□□□□ -1.07
VPS53-214ENST00000572607 LYSMD4Q5XG99 296 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 LRSAM1Q6UWE0 723 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 CFAP52Q8N1V2 620 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 FIBINQ8TAL6 211 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 NETO1Q8TDF5 533 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 SLC20A1Q8WUM9 679 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 RLN3Q8WXF3 142 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 CPA5Q8WXQ8 436 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 SORCS1Q8WY21 1168 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 DDX1Q92499 740 aaKnown RBP8.37□□□□□ -1.07
VPS53-214ENST00000572607 PRCCQ92733 491 aaPredicted RBP8.37□□□□□ -1.07
VPS53-214ENST00000572607 ERLEC1Q96DZ1 483 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 P2RY11Q96G91 374 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 PRICKLE1Q96MT3 831 aaPredicted RBP8.37□□□□□ -1.07
VPS53-214ENST00000572607 RPRD1AQ96P16 312 aaPredicted RBP8.37□□□□□ -1.07
VPS53-214ENST00000572607 C11orf70Q9BRQ4 267 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 WDCPQ9H6R7 721 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 FBRSQ9HAH7 460 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 PRDM16Q9HAZ2 1276 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 KIAA1522Q9P206 1035 aaPredicted RBP8.37□□□□□ -1.07
VPS53-214ENST00000572607 SUN2Q9UH99 717 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 HCN2Q9UL51 889 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 CYP8B1Q9UNU6 501 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 KIAA1549LQ6ZVL6 1849 aa8.37□□□□□ -1.07
VPS53-214ENST00000572607 SDK1Q7Z5N4 2213 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.36□□□□□ -1.07
VPS53-214ENST00000572607 A0A1B0GVM2 712 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 FAM170AA1A519 330 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 BCLAF3A2AJT9 711 aaKnown RBP8.36□□□□□ -1.07
VPS53-214ENST00000572607 TCAF2A6NFQ2 919 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 WASH3PC4AMC7 463 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 EPHB6O15197 1021 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 RNASEH1O60930 286 aaKnown RBP8.36□□□□□ -1.07
VPS53-214ENST00000572607 NDUFS2O75306 463 aa8.36□□□□□ -1.07
VPS53-214ENST00000572607 CYP1A1P04798 512 aaPredicted RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms