RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 BRD8Q9H0E9 1235 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 TKTL2Q9H0I9 626 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 CLIC5Q9NZA1 410 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 CALCOCO1Q9P1Z2 691 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 PAK5Q9P286 719 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 PLAAQ9Y263 795 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 SLC27A5Q9Y2P5 690 aa9.21□□□□□ -0.94
VPS39-207ENST00000563692 MRPS23Q9Y3D9 190 aaKnown RBP9.21□□□□□ -0.94
VPS39-207ENST00000563692 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.2□□□□□ -0.94
VPS39-207ENST00000563692 A0A1W2PQH9 124 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 WDR27A2RRH5 827 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 AGPSO00116 658 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 ZNF197O14709 1029 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 PPP1R12AO14974 1030 aaPredicted RBP9.2□□□□□ -0.94
VPS39-207ENST00000563692 KCNN4O15554 427 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 ABLIM3O94929 683 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 RHOP08100 348 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 MYZAPP0CAP1 466 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 ZSCAN5DPP0CG00 497 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 SRFP11831 508 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 MX2P20592 715 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 RPL22P35268 128 aaKnown RBP9.2□□□□□ -0.94
VPS39-207ENST00000563692 CLCN5P51795 746 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 TPI1P60174 286 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 PITX1P78337 314 aaPredicted RBP9.2□□□□□ -0.94
VPS39-207ENST00000563692 NTHL1P78549 312 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 PLD1Q13393 1074 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 PAFAH1B3Q15102 231 aaKnown RBP9.2□□□□□ -0.94
VPS39-207ENST00000563692 TAF12Q16514 161 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 SLC45A4Q5BKX6 768 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 OTUD1Q5VV17 481 aaPredicted RBP9.2□□□□□ -0.94
VPS39-207ENST00000563692 HEATR6Q6AI08 1181 aaKnown RBP9.2□□□□□ -0.94
VPS39-207ENST00000563692 ASTLQ6HA08 431 aaPredicted RBP9.2□□□□□ -0.94
VPS39-207ENST00000563692 RHBDF2Q6PJF5 856 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 NPNTQ6UXI9 565 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 RSPO2Q6UXX9 243 aaPredicted RBP9.2□□□□□ -0.94
VPS39-207ENST00000563692 PPP1R21Q6ZMI0 780 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 CENPUQ71F23 418 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 SCD5Q86SK9 330 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 TAC4Q86UU9 113 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 HOOK3Q86VS8 718 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 CCDC25Q86WR0 208 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 UNC45BQ8IWX7 931 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 TCEAL8Q8IYN2 117 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 SIX5Q8N196 739 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 PYROXD2Q8N2H3 581 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 SLC44A3Q8N4M1 653 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 ZCCHC9Q8N567 271 aaKnown RBP9.2□□□□□ -0.94
VPS39-207ENST00000563692 FAM71DQ8N9W8 422 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 LEMD2Q8NC56 503 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 TFB1MQ8WVM0 346 aaKnown RBP9.2□□□□□ -0.94
VPS39-207ENST00000563692 FGF13Q92913 245 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 FBXO32Q969P5 355 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 ZNF512Q96ME7 567 aaPredicted RBP9.2□□□□□ -0.94
VPS39-207ENST00000563692 ADAM33Q9BZ11 813 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 FRMD8Q9BZ67 464 aaPredicted RBP9.2□□□□□ -0.94
VPS39-207ENST00000563692 TXLNGYQ9BZA5 131 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 SMOC2Q9H3U7 446 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 ARHGEF38Q9NXL2 777 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 DONSONQ9NYP3 566 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 WNT16Q9UBV4 365 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 OR12D3Q9UGF7 316 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 AFF4Q9UHB7 1163 aaKnown RBP9.2□□□□□ -0.94
VPS39-207ENST00000563692 NUMBLQ9Y6R0 609 aa9.2□□□□□ -0.94
VPS39-207ENST00000563692 FAM92AA1XBS5 289 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 C5orf60A6NFR6 353 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 SLC38A8A6NNN8 435 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 ANHXE9PGG2 379 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 POLR3GO15318 223 aaPredicted RBP9.19□□□□□ -0.94
VPS39-207ENST00000563692 EIF3HO15372 352 aaKnown RBP eCLIP9.19□□□□□ -0.94
VPS39-207ENST00000563692 IRAK2O43187 625 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 MTSS1O43312 755 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 SYF2O95926 243 aaKnown RBP9.19□□□□□ -0.94
VPS39-207ENST00000563692 PDGFBP01127 241 aaPredicted RBP9.19□□□□□ -0.94
VPS39-207ENST00000563692 IGLV3-25P01717 112 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 ETS1P14921 441 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 PTPN2P17706 415 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 ERCC2P18074 760 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 RBL1P28749 1068 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 SERPINB6P35237 376 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 ALDH1A3P47895 512 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 ARL4CP56559 192 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 TBX4P57082 545 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 COG7P83436 770 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 NHLH1Q02575 133 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 EIF4EBP2Q13542 120 aaPredicted RBP9.19□□□□□ -0.94
VPS39-207ENST00000563692 HTR4Q13639 388 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 CEP85LQ5SZL2 805 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 RNASEH2BQ5TBB1 312 aaKnown RBP9.19□□□□□ -0.94
VPS39-207ENST00000563692 SDHAF4Q5VUM1 108 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 NCBP2-AS2Q69YL0 99 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 MSANTD2Q6P1R3 559 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 RELL1Q8IUW5 271 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 PDZD8Q8NEN9 1154 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 ITFG1Q8TB96 612 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 OVCA2Q8WZ82 227 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 RTP4Q96DX8 246 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 SHDQ96IW2 340 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 C1orf74Q96LT6 269 aa9.19□□□□□ -0.94
VPS39-207ENST00000563692 TTC25Q96NG3 672 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms