RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 CCAR2Q8N163 923 aaKnown RBP17.39■□□□□ 0.37
CLK3-210ENST00000563112 HDDC3Q8N4P3 179 aa17.39■□□□□ 0.37
CLK3-210ENST00000563112 SPAG5Q96R06 1193 aa17.39■□□□□ 0.37
CLK3-210ENST00000563112 PCED1AQ9H1Q7 454 aa17.39■□□□□ 0.37
CLK3-210ENST00000563112 GANQ9H2C0 597 aa17.39■□□□□ 0.37
CLK3-210ENST00000563112 WDCPQ9H6R7 721 aa17.39■□□□□ 0.37
CLK3-210ENST00000563112 CAPN10Q9HC96 672 aa17.39■□□□□ 0.37
CLK3-210ENST00000563112 FAM207AQ9NSI2 230 aaPredicted RBP17.39■□□□□ 0.37
CLK3-210ENST00000563112 NCKAP1Q9Y2A7 1128 aa17.39■□□□□ 0.37
CLK3-210ENST00000563112 TPRP12270 2363 aaKnown RBP17.38■□□□□ 0.37
CLK3-210ENST00000563112 TARSL2A2RTX5 802 aaKnown RBP17.38■□□□□ 0.37
CLK3-210ENST00000563112 METTL12A8MUP2 240 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 ARHGAP33O14559 1287 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 GFPT2O94808 682 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 CSRP1P21291 193 aaKnown RBP17.38■□□□□ 0.37
CLK3-210ENST00000563112 MAOBP27338 520 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 SULT1E1P49888 294 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 COPB1P53618 953 aaKnown RBP17.38■□□□□ 0.37
CLK3-210ENST00000563112 SULT2A1Q06520 285 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 AUHQ13825 339 aaKnown RBP17.38■□□□□ 0.37
CLK3-210ENST00000563112 HNRNPA1L2Q32P51 320 aaKnown RBP17.38■□□□□ 0.37
CLK3-210ENST00000563112 BRMS1LQ5PSV4 323 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 N4BP2L1Q5TBK1 243 aaPredicted RBP17.38■□□□□ 0.37
CLK3-210ENST00000563112 DCAF12L1Q5VU92 463 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 PSAPL1Q6NUJ1 521 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 XYLT1Q86Y38 959 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 EPS8L1Q8TE68 723 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 GANCQ8TET4 914 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 DNASE2BQ8WZ79 361 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 MRGPRX3Q96LB0 322 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 NPY6RQ99463 290 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 BTBD1Q9H0C5 482 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 MIR1-1HGQ9H1L0 117 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 NLRC4Q9NPP4 1024 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 LIMA1Q9UHB6 759 aaKnown RBP17.38■□□□□ 0.37
CLK3-210ENST00000563112 SCML1Q9UN30 329 aa17.38■□□□□ 0.37
CLK3-210ENST00000563112 MUC22E2RYF6 1773 aaPredicted RBP17.38■□□□□ 0.37
CLK3-210ENST00000563112 ASCC3Q8N3C0 2202 aaKnown RBP17.37■□□□□ 0.37
CLK3-210ENST00000563112 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.37■□□□□ 0.37
CLK3-210ENST00000563112 EDDM13A0A1B0GTR0 161 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 A0A1B0GTW7 788 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 OPHN1O60890 802 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 SIN3BO75182 1162 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 PAGE1O75459 146 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 MMEP08473 750 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 C7P10643 843 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 PDGFRAP16234 1089 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 SOX5P35711 763 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 STAT1P42224 750 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 CXCR3P49682 368 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 PLK1P53350 603 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 DEUP1Q05D60 604 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 ZNF177Q13360 481 aaPredicted RBP17.37■□□□□ 0.37
CLK3-210ENST00000563112 ARID5BQ14865 1188 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 SH3PXD2AQ5TCZ1 1133 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 LRSAM1Q6UWE0 723 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 APCDD1Q8J025 514 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 NEK11Q8NG66 645 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 CPA5Q8WXQ8 436 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 MYO19Q96H55 970 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 SIK2Q9H0K1 926 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 RSPH9Q9H1X1 276 aaPredicted RBP17.37■□□□□ 0.37
CLK3-210ENST00000563112 MTG2Q9H4K7 406 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 SLC32A1Q9H598 525 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 VANGL2Q9ULK5 521 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 HS3ST4Q9Y661 456 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 CACNA1EQ15878 2313 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 ACACBO00763 2458 aa17.37■□□□□ 0.37
CLK3-210ENST00000563112 GOLGA8SH3BPF8 625 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 CLDN11O75508 207 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 CEACAM1P13688 526 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 CTSOP43234 321 aaPredicted RBP17.36■□□□□ 0.37
CLK3-210ENST00000563112 KLK7P49862 253 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 NOMO3P69849 1222 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 CDR2Q01850 454 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 UBXN1Q04323 297 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 SYCP1Q15431 976 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 SLC25A52Q3SY17 297 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 ACBD5Q5T8D3 534 aaPredicted RBP17.36■□□□□ 0.37
CLK3-210ENST00000563112 NAA35Q5VZE5 725 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 CIR1Q86X95 450 aaPredicted RBP17.36■□□□□ 0.37
CLK3-210ENST00000563112 DHX40Q8IX18 779 aaKnown RBP17.36■□□□□ 0.37
CLK3-210ENST00000563112 ZCCHC9Q8N567 271 aaKnown RBP17.36■□□□□ 0.37
CLK3-210ENST00000563112 MINDY1Q8N5J2 469 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 IGSF8Q969P0 613 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 NT5C3BQ969T7 300 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 PGAP3Q96FM1 320 aaPredicted RBP17.36■□□□□ 0.37
CLK3-210ENST00000563112 RPL10LQ96L21 214 aaKnown RBP17.36■□□□□ 0.37
CLK3-210ENST00000563112 ZDHHC5Q9C0B5 715 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 NAT10Q9H0A0 1025 aaKnown RBP17.36■□□□□ 0.37
CLK3-210ENST00000563112 TKTL2Q9H0I9 626 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 SGK2Q9HBY8 427 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 FSCN3Q9NQT6 498 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 PIGVQ9NUD9 493 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 ARHGEF38Q9NXL2 777 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 SLCO3A1Q9UIG8 710 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 ADAMTS9Q9P2N4 1935 aa17.36■□□□□ 0.37
CLK3-210ENST00000563112 FAM170AA1A519 330 aa17.35■□□□□ 0.37
CLK3-210ENST00000563112 LGALS16A8MUM7 142 aa17.35■□□□□ 0.37
CLK3-210ENST00000563112 TTC34A8MYJ7 566 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms