RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 TBC1D3Q8IZP1 549 aaPredicted RBP9.46□□□□□ -0.89
VPS39-205ENST00000562258 C4orf33Q8N1A6 199 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 HIST1H2AHQ96KK5 128 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 CYTH2Q99418 400 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 HIST1H2AJQ99878 128 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 H2AFJQ9BTM1 129 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 ABCG8Q9H221 673 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 TNKS2Q9H2K2 1166 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 GTSE1Q9NYZ3 720 aa9.46□□□□□ -0.89
VPS39-205ENST00000562258 CPSF2Q9P2I0 782 aaKnown RBP9.46□□□□□ -0.89
VPS39-205ENST00000562258 VIRMAQ69YN4 1812 aaKnown RBP9.46□□□□□ -0.9
VPS39-205ENST00000562258 EVPLQ92817 2033 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 MYH7P12883 1935 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 A0A0A6YYK5 440 aaPredicted RBP9.46□□□□□ -0.9
VPS39-205ENST00000562258 PIRO00625 290 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 LRCH4O75427 683 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 PIAS1O75925 651 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 BAIAP3O94812 1187 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 NFATC1O95644 943 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 EPCAMP16422 314 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 MAP4P27816 1152 aaKnown RBP9.46□□□□□ -0.9
VPS39-205ENST00000562258 ABCG1P45844 678 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 GBE1Q04446 702 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 UBXN11Q5T124 520 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 C6orf163Q5TEZ5 329 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 HGSNATQ68CP4 663 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 C11orf63Q6NUN7 778 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 SLC26A9Q7LBE3 791 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 CPNE8Q86YQ8 564 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 CMTM8Q8IZV2 173 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 USP6NLQ92738 828 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 ARHGEF2Q92974 986 aaKnown RBP9.46□□□□□ -0.9
VPS39-205ENST00000562258 RNF157Q96PX1 679 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 BPIFA1Q9NP55 256 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 TBC1D14Q9P2M4 693 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 DNAJC16Q9Y2G8 782 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 NUMA1Q14980 2115 aa9.46□□□□□ -0.9
VPS39-205ENST00000562258 A0A087WUV0 522 aaPredicted RBP9.45□□□□□ -0.9
VPS39-205ENST00000562258 H0YGN5 161 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 SCAMP1O15126 338 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 ACSL4O60488 711 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 UGT2B4P06133 528 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 KITP10721 976 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 BRAFP15056 766 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 ABL2P42684 1182 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 KPNA2P52292 529 aaKnown RBP9.45□□□□□ -0.9
VPS39-205ENST00000562258 ARMC12Q5T9G4 340 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 PPIL6Q8IXY8 311 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 CRYBG2Q8N1P7 616 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 CCDC185Q8N715 623 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 ALG3Q92685 438 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 USP13Q92995 863 aaPredicted RBP9.45□□□□□ -0.9
VPS39-205ENST00000562258 SMOQ99835 787 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 ISCUQ9H1K1 167 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 SIX2Q9NPC8 291 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 TMPRSS4Q9NRS4 437 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 PCDHGC5Q9Y5F6 944 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 MYH8P13535 1937 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 NCAM2O15394 837 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 PSMD3O43242 534 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 GMNNO75496 209 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 RHOBTB1O94844 696 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 CCNB1P14635 433 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 TACR2P21452 398 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 SERPINA4P29622 427 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 GYS2P54840 703 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 EIF3BP55884 814 aaKnown RBP9.45□□□□□ -0.9
VPS39-205ENST00000562258 IL9RQ01113 521 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 AUHQ13825 339 aaKnown RBP9.45□□□□□ -0.9
VPS39-205ENST00000562258 CCDC121Q6ZUS5 278 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 CEP68Q76N32 757 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 PHACTR4Q8IZ21 702 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 ZSCAN18Q8TBC5 510 aaPredicted RBP9.45□□□□□ -0.9
VPS39-205ENST00000562258 PPP1R36Q96LQ0 422 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 YIPF2Q9BWQ6 316 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 POLR1EQ9GZS1 481 aaKnown RBP9.45□□□□□ -0.9
VPS39-205ENST00000562258 TDP1Q9NUW8 608 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 TAF1LQ8IZX4 1826 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 GRM6O15303 877 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 MAP3K7O43318 606 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 DAB1O75553 588 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 CD48P09326 243 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 MAGOHP61326 146 aaKnown RBP9.45□□□□□ -0.9
VPS39-205ENST00000562258 SNRPD1P62314 119 aaKnown RBP9.45□□□□□ -0.9
VPS39-205ENST00000562258 CCNG2Q16589 344 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 KLHL38Q2WGJ6 581 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 LRRC73Q5JTD7 316 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 ERAP2Q6P179 960 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 FOXR2Q6PJQ5 311 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 TAS1R1Q7RTX1 841 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 LINC00523Q86TU6 105 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 C3orf58Q8NDZ4 430 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 TRMT61BQ9BVS5 477 aaKnown RBP9.45□□□□□ -0.9
VPS39-205ENST00000562258 CXCL16Q9H2A7 254 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 HSD3B7Q9H2F3 369 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 ZFP37Q9Y6Q3 630 aaPredicted RBP9.45□□□□□ -0.9
VPS39-205ENST00000562258 NDUFS2O75306 463 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 BEST1O76090 585 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 VAPBO95292 243 aa9.45□□□□□ -0.9
VPS39-205ENST00000562258 RHOP08100 348 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms