RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 GRK4P32298 578 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 ARPP19P56211 112 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 YWHAHQ04917 246 aaPredicted RBP10.89□□□□□ -0.67
CUX1-217ENST00000558836 LGSNQ5TDP6 509 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 SPATA22Q8NHS9 363 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 CASP10Q92851 521 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 NMUR1Q9HB89 426 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 MPP6Q9NZW5 540 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 PDE4DIPQ5VU43 2346 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 TPP1O14773 563 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 ALDOAP04075 364 aaKnown RBP10.89□□□□□ -0.67
CUX1-217ENST00000558836 DHRS4L1P0CG22 281 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 NQO1P15559 274 aaKnown RBP10.89□□□□□ -0.67
CUX1-217ENST00000558836 PBX3P40426 434 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 CXCR3P49682 368 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 ACLYP53396 1101 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 TMPRSS15P98073 1019 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 E2F5Q15329 346 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 CHI3L2Q15782 390 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 FYB2Q5VWT5 728 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 C4orf22Q6V702 233 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 SPATA2LQ8IUW3 424 aaPredicted RBP10.89□□□□□ -0.67
CUX1-217ENST00000558836 SPNS2Q8IVW8 549 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 TTC9BQ8N6N2 239 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 ZNF419Q96HQ0 510 aaPredicted RBP10.89□□□□□ -0.67
CUX1-217ENST00000558836 ZNF778Q96MU6 729 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 CHRAC1Q9NRG0 131 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 ZNF358Q9NW07 568 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 HEY2Q9UBP5 337 aa10.89□□□□□ -0.67
CUX1-217ENST00000558836 MT-CYBP00156 380 aaPredicted RBP10.88□□□□□ -0.67
CUX1-217ENST00000558836 CKBP12277 381 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 ALADP13716 330 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 GARSP41250 739 aaKnown RBP10.88□□□□□ -0.67
CUX1-217ENST00000558836 BST1Q10588 318 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 GRIK3Q13003 919 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 BTBD8Q5XKL5 378 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 CMC1Q7Z7K0 106 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 SMC1BQ8NDV3 1235 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 NTAN1Q96AB6 310 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 ZNF669Q96BR6 464 aaPredicted RBP10.88□□□□□ -0.67
CUX1-217ENST00000558836 SLC9A7Q96T83 725 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 EPAS1Q99814 870 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 FERMT1Q9BQL6 677 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 MLPHQ9BV36 600 aaPredicted RBP10.88□□□□□ -0.67
CUX1-217ENST00000558836 OSER1Q9NX31 292 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 ZFATQ9P243 1243 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 ZNF180Q9UJW8 692 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 ARHGAP42A6NI28 874 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 UNC5CO95185 931 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 T-ENOLP0DO92 83 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 SERPINB3P29508 390 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 ALDH3A1P30838 453 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 GATMP50440 423 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 PDE1BQ01064 536 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 TSPY1Q01534 308 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 PPIDQ08752 370 aaKnown RBP10.88□□□□□ -0.67
CUX1-217ENST00000558836 SCAPQ12770 1279 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 HSP90AA5PQ58FG0 334 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 CLLU1OSQ5K130 101 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 PM20D1Q6GTS8 502 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 PACS1Q6VY07 963 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 TTC7BQ86TV6 843 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 NUDCD3Q8IVD9 361 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 THEM5Q8N1Q8 247 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 GBP7Q8N8V2 638 aaPredicted RBP10.88□□□□□ -0.67
CUX1-217ENST00000558836 PKMYT1Q99640 499 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 ATXN3LQ9H3M9 355 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 KCNK13Q9HB14 408 aa10.88□□□□□ -0.67
CUX1-217ENST00000558836 C9IYK1 514 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 M0QZQ0 153 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 PAGE1O75459 146 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 TRPA1O75762 1119 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 TBX18O95935 607 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 TROVE2P10155 538 aaKnown RBP eCLIP10.87□□□□□ -0.67
CUX1-217ENST00000558836 PGAM1P18669 254 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 SAT1P21673 171 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 SNCBQ16143 134 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 TRIM71Q2Q1W2 868 aaKnown RBP10.87□□□□□ -0.67
CUX1-217ENST00000558836 RASSF3Q86WH2 238 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 CNTD1Q8N815 330 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 ATAD1Q8NBU5 361 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 TMEM120AQ9BXJ8 343 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 TRIM55Q9BYV6 548 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 CAB39LQ9H9S4 337 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 ACSS2Q9NR19 701 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 ARMCX1Q9P291 453 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 ZFP69BQ9UJL9 534 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 VANGL2Q9ULK5 521 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 L3MBTL1Q9Y468 752 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 A0A1W2PQH9 124 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 NT5C1B-RDH14C9J2C7 533 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 MGRN1O60291 552 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 TOMM70O94826 608 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 F9P00740 461 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 FAM163BP0C2L3 166 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 MYL2P10916 166 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 RAB27AP51159 221 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 USP46P62068 366 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 SP3Q02447 781 aa10.87□□□□□ -0.67
CUX1-217ENST00000558836 PDE1CQ14123 709 aaPredicted RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms