RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 TBX4P57082 545 aa27.01■■□□□ 1.92
CCDC88C-205ENST00000553403 UNC5AQ6ZN44 842 aa27.01■■□□□ 1.92
CCDC88C-205ENST00000553403 CYS1Q717R9 158 aa27.01■■□□□ 1.92
CCDC88C-205ENST00000553403 CCNJLQ8IV13 435 aa27.01■■□□□ 1.92
CCDC88C-205ENST00000553403 GSDMBQ8TAX9 411 aa27.01■■□□□ 1.92
CCDC88C-205ENST00000553403 MGARPQ8TDB4 240 aa27.01■■□□□ 1.92
CCDC88C-205ENST00000553403 MZB1Q8WU39 189 aa27.01■■□□□ 1.92
CCDC88C-205ENST00000553403 DPF3Q92784 378 aa27.01■■□□□ 1.92
CCDC88C-205ENST00000553403 SEPT5Q99719 369 aaPredicted RBP27.01■■□□□ 1.92
CCDC88C-205ENST00000553403 FNIP2Q9P278 1114 aa27.01■■□□□ 1.92
CCDC88C-205ENST00000553403 HS3ST4Q9Y661 456 aa27.01■■□□□ 1.92
CCDC88C-205ENST00000553403 IKBKGQ9Y6K9 419 aa27.01■■□□□ 1.92
CCDC88C-205ENST00000553403 IQANK1A0A1B0GTG1 560 aa27.01■■□□□ 1.91
CCDC88C-205ENST00000553403 SDR42E2A6NKP2 422 aa27.01■■□□□ 1.91
CCDC88C-205ENST00000553403 WASH4PA8MWX3 477 aa27.01■■□□□ 1.91
CCDC88C-205ENST00000553403 TEX44Q53QW1 395 aa27.01■■□□□ 1.91
CCDC88C-205ENST00000553403 PRPF38BQ5VTL8 546 aaKnown RBP27.01■■□□□ 1.91
CCDC88C-205ENST00000553403 STEAP4Q687X5 459 aa27.01■■□□□ 1.91
CCDC88C-205ENST00000553403 CPLX4Q7Z7G2 160 aa27.01■■□□□ 1.91
CCDC88C-205ENST00000553403 CKAP2Q8WWK9 683 aa27.01■■□□□ 1.91
CCDC88C-205ENST00000553403 FAM107BQ9H098 131 aa27.01■■□□□ 1.91
CCDC88C-205ENST00000553403 GBA3Q9H227 469 aa27.01■■□□□ 1.91
CCDC88C-205ENST00000553403 CRISPLD1Q9H336 500 aa27.01■■□□□ 1.91
CCDC88C-205ENST00000553403 CWH43Q9H720 699 aa27.01■■□□□ 1.91
CCDC88C-205ENST00000553403 MTPAPQ9NVV4 582 aaKnown RBP eCLIP27.01■■□□□ 1.91
CCDC88C-205ENST00000553403 MTRRQ9UBK8 725 aa27.01■■□□□ 1.91
CCDC88C-205ENST00000553403 BACE2Q9Y5Z0 518 aa27.01■■□□□ 1.91
CCDC88C-205ENST00000553403 MAD1L1Q9Y6D9 718 aa27.01■■□□□ 1.91
CCDC88C-205ENST00000553403 ERI2A8K979 691 aaKnown RBP27■■□□□ 1.91
CCDC88C-205ENST00000553403 SUN1O94901 812 aa27■■□□□ 1.91
CCDC88C-205ENST00000553403 INHBAP08476 426 aa27■■□□□ 1.91
CCDC88C-205ENST00000553403 CCNCP24863 283 aa27■■□□□ 1.91
CCDC88C-205ENST00000553403 USP41Q3LFD5 358 aa27■■□□□ 1.91
CCDC88C-205ENST00000553403 ARHGAP12Q8IWW6 846 aa27■■□□□ 1.91
CCDC88C-205ENST00000553403 RNF168Q8IYW5 571 aaPredicted RBP27■■□□□ 1.91
CCDC88C-205ENST00000553403 MPP5Q8N3R9 675 aa27■■□□□ 1.91
CCDC88C-205ENST00000553403 STAMBPL1Q96FJ0 436 aa27■■□□□ 1.91
CCDC88C-205ENST00000553403 ZNF180Q9UJW8 692 aa27■■□□□ 1.91
CCDC88C-205ENST00000553403 PRDM4Q9UKN5 801 aa27■■□□□ 1.91
CCDC88C-205ENST00000553403 E9PAM4 449 aa26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 SOAT2O75908 522 aa26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 GJA8P48165 433 aa26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 IFNAR2P48551 515 aa26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 TAF10Q12962 218 aa26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 LRRC14Q15048 493 aa26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 TRIP4Q15650 581 aaPredicted RBP26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 SLC8B1Q6J4K2 584 aa26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 PRSS55Q6UWB4 352 aaPredicted RBP26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 PRPF39Q86UA1 669 aaKnown RBP26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 SLC26A11Q86WA9 606 aa26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 FBXO22Q8NEZ5 403 aa26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 GPR152Q8TDT2 470 aa26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 DENND1AQ8TEH3 1009 aa26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 DEPDC1BQ8WUY9 529 aa26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 ALKBH8Q96BT7 664 aaKnown RBP26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 CELF6Q96J87 481 aaKnown RBP26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 NAT9Q9BTE0 207 aa26.99■■□□□ 1.91
CCDC88C-205ENST00000553403 A0A1W2PPM1 405 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 F5H423 210 aaPredicted RBP26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 ZBTB24O43167 697 aaPredicted RBP26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 UPP2O95045 317 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 AP2A1O95782 977 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 GBP2P32456 591 aaPredicted RBP26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 TUBP50607 506 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 DUSP4Q13115 394 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 LRRC49Q8IUZ0 686 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 RTL3Q8N8U3 475 aaKnown RBP26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 ATP6V0D2Q8N8Y2 350 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 TEKT5Q96M29 485 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 TMEM39AQ9NV64 488 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 CDY1Q9Y6F8 540 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 MOCS2O96007 188 aaPredicted RBP26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 ZDHHC11BP0C7U3 371 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 CD68P34810 354 aaPredicted RBP26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 ZBTB17Q13105 803 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 QPCTQ16769 361 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 ACBD5Q5T8D3 534 aaPredicted RBP26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 AFMIDQ63HM1 303 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 NUGGCQ68CJ6 796 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 MICALCLQ6ZW33 695 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 LRRC6Q86X45 466 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 LRRC34Q8IZ02 419 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 ZSCAN18Q8TBC5 510 aaPredicted RBP26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 IGSF21Q96ID5 467 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 GORASP1Q9BQQ3 440 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 TTLL2Q9BWV7 592 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 KIF9Q9HAQ2 790 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 ATP11BQ9Y2G3 1177 aa26.98■■□□□ 1.91
CCDC88C-205ENST00000553403 FAM159BA6NKW6 160 aa26.97■■□□□ 1.91
CCDC88C-205ENST00000553403 PSMD3O43242 534 aa26.97■■□□□ 1.91
CCDC88C-205ENST00000553403 TYROBPO43914 113 aa26.97■■□□□ 1.91
CCDC88C-205ENST00000553403 SPAG7O75391 227 aa26.97■■□□□ 1.91
CCDC88C-205ENST00000553403 EFEMP1Q12805 493 aa26.97■■□□□ 1.91
CCDC88C-205ENST00000553403 PIK3R6Q5UE93 754 aa26.97■■□□□ 1.91
CCDC88C-205ENST00000553403 C14orf80Q86SX3 495 aa26.97■■□□□ 1.91
CCDC88C-205ENST00000553403 C4orf33Q8N1A6 199 aa26.97■■□□□ 1.91
CCDC88C-205ENST00000553403 ATPAF2Q8N5M1 289 aa26.97■■□□□ 1.91
CCDC88C-205ENST00000553403 VWCEQ96DN2 955 aa26.97■■□□□ 1.91
CCDC88C-205ENST00000553403 MAGEB18Q96M61 343 aa26.97■■□□□ 1.91
CCDC88C-205ENST00000553403 NSRP1Q9H0G5 558 aaKnown RBP26.97■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms