RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 KBTBD2Q8IY47 623 aa9.09□□□□□ -0.95
VPS13D-212ENST00000543766 C4orf33Q8N1A6 199 aa9.09□□□□□ -0.95
VPS13D-212ENST00000543766 CATSPER1Q8NEC5 780 aa9.09□□□□□ -0.95
VPS13D-212ENST00000543766 SPATA20Q8TB22 786 aa9.09□□□□□ -0.95
VPS13D-212ENST00000543766 CABLES1Q8TDN4 633 aa9.09□□□□□ -0.95
VPS13D-212ENST00000543766 MCRS1Q96EZ8 462 aa9.09□□□□□ -0.95
VPS13D-212ENST00000543766 REXO5Q96IC2 774 aaKnown RBP9.09□□□□□ -0.95
VPS13D-212ENST00000543766 FBXL18Q96ME1 805 aa9.09□□□□□ -0.95
VPS13D-212ENST00000543766 PRDM5Q9NQX1 630 aaPredicted RBP9.09□□□□□ -0.95
VPS13D-212ENST00000543766 ITM2CQ9NQX7 267 aa9.09□□□□□ -0.95
VPS13D-212ENST00000543766 PGAP2Q9UHJ9 254 aa9.09□□□□□ -0.95
VPS13D-212ENST00000543766 RPS6KA6Q9UK32 745 aa9.09□□□□□ -0.95
VPS13D-212ENST00000543766 RGPD2P0DJD1 1756 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 ASTN2O75129 1339 aaPredicted RBP9.08□□□□□ -0.96
VPS13D-212ENST00000543766 PCDH17O14917 1159 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 CABYRO75952 493 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 OR7A10O76100 309 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 FHP07954 510 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 ZNF806P0C7X5 589 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 MAGP20916 626 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 HOXC9P31274 260 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 RYKP34925 604 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 GPC1P35052 558 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 CDC34P49427 236 aaPredicted RBP9.08□□□□□ -0.96
VPS13D-212ENST00000543766 CHRNEQ04844 493 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 PNOCQ13519 176 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 TRIM16LQ309B1 348 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 PCGF3Q3KNV8 242 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 ZNF805Q5CZA5 627 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 EFHC1Q5JVL4 640 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 CDKAL1Q5VV42 579 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 RESP18Q5W5W9 173 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 IDO2Q6ZQW0 420 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 CAMK1DQ8IU85 385 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 ARFGAP2Q8N6H7 521 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 NIPA2Q8N8Q9 360 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 LPCAT1Q8NF37 534 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 OR6S1Q8NH40 331 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 CEP76Q8TAP6 659 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 CENPIQ92674 756 aaPredicted RBP9.08□□□□□ -0.96
VPS13D-212ENST00000543766 EME1Q96AY2 570 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 C5orf34Q96MH7 638 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 VRK1Q99986 396 aaPredicted RBP9.08□□□□□ -0.96
VPS13D-212ENST00000543766 TUBGCP2Q9BSJ2 902 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 UBAC1Q9BSL1 405 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 GON7Q9BXV9 100 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 ECHDC1Q9NTX5 307 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 TNFSF13BQ9Y275 285 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 LRRC42Q9Y546 428 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 DNMT3AQ9Y6K1 912 aaPredicted RBP9.08□□□□□ -0.96
VPS13D-212ENST00000543766 NOP56O00567 594 aaKnown RBP9.08□□□□□ -0.96
VPS13D-212ENST00000543766 SH2B2O14492 632 aaPredicted RBP9.08□□□□□ -0.96
VPS13D-212ENST00000543766 PPEF1O14829 653 aaPredicted RBP9.08□□□□□ -0.96
VPS13D-212ENST00000543766 B4GAT1O43505 415 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 OSBPP22059 807 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 ATP2B4P23634 1241 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 KPNA2P52292 529 aaKnown RBP9.08□□□□□ -0.96
VPS13D-212ENST00000543766 RTP1P59025 263 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 LSM12Q3MHD2 195 aaKnown RBP9.08□□□□□ -0.96
VPS13D-212ENST00000543766 SUPT20HL1Q3ZLR7 823 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 LCN1P1Q5VSP4 162 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 PTRHD1Q6GMV3 140 aaKnown RBP9.08□□□□□ -0.96
VPS13D-212ENST00000543766 SCFD1Q8WVM8 642 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 ATP2A3Q93084 1043 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 PELOQ9BRX2 385 aaKnown RBP9.08□□□□□ -0.96
VPS13D-212ENST00000543766 MCMBPQ9BTE3 642 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 DCLK3Q9C098 648 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 ZNF518BQ9C0D4 1074 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 TXLNGQ9NUQ3 528 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.08□□□□□ -0.96
VPS13D-212ENST00000543766 NDUFA13Q9P0J0 144 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 STK17AQ9UEE5 414 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 SLC7A8Q9UHI5 535 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 SAR1BQ9Y6B6 198 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 PPP1R3GB7ZBB8 358 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 MAN1A2O60476 641 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 HSF2BPO75031 334 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 MFN2O95140 757 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 NR1D1P20393 614 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 NOS3P29474 1203 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 CAMK2DQ13557 499 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 FAM76BQ5HYJ3 339 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 VWA5B1Q5TIE3 1220 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 SCARA3Q6AZY7 606 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 PAPD4Q6PIY7 484 aaKnown RBP9.08□□□□□ -0.96
VPS13D-212ENST00000543766 TRMT44Q8IYL2 757 aaKnown RBP9.08□□□□□ -0.96
VPS13D-212ENST00000543766 OR8H3Q8N146 312 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 CLIP4Q8N3C7 705 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 KDM1BQ8NB78 822 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 SLC37A3Q8NCC5 494 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 GSTCDQ8NEC7 633 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 OR14C36Q8NHC7 312 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 WFIKKN2Q8TEU8 576 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 SEC16BQ96JE7 1060 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 PARD6GQ9BYG4 376 aaPredicted RBP9.08□□□□□ -0.96
VPS13D-212ENST00000543766 AZI2Q9H6S1 392 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 NFU1Q9UMS0 254 aa9.08□□□□□ -0.96
VPS13D-212ENST00000543766 BUB1O43683 1085 aa9.07□□□□□ -0.96
VPS13D-212ENST00000543766 EXOC3O60645 756 aa9.07□□□□□ -0.96
VPS13D-212ENST00000543766 ABCB7O75027 752 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms