RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 PRICKLE1Q96MT3 831 aaPredicted RBP9.63□□□□□ -0.87
DDX55-208ENST00000541259 RPRD1AQ96P16 312 aaPredicted RBP9.63□□□□□ -0.87
DDX55-208ENST00000541259 CSPG4P5Q96PW8 444 aa9.63□□□□□ -0.87
DDX55-208ENST00000541259 RNF157Q96PX1 679 aa9.63□□□□□ -0.87
DDX55-208ENST00000541259 PHF7Q9BWX1 381 aaPredicted RBP9.63□□□□□ -0.87
DDX55-208ENST00000541259 OSBPL8Q9BZF1 889 aa9.63□□□□□ -0.87
DDX55-208ENST00000541259 CARD9Q9H257 536 aa9.63□□□□□ -0.87
DDX55-208ENST00000541259 NDFIP2Q9NV92 336 aa9.63□□□□□ -0.87
DDX55-208ENST00000541259 LIMD1Q9UGP4 676 aa9.63□□□□□ -0.87
DDX55-208ENST00000541259 ZNF510Q9Y2H8 683 aa9.63□□□□□ -0.87
DDX55-208ENST00000541259 SAR1BQ9Y6B6 198 aa9.63□□□□□ -0.87
DDX55-208ENST00000541259 ZFP37Q9Y6Q3 630 aaPredicted RBP9.63□□□□□ -0.87
DDX55-208ENST00000541259 NUMBLQ9Y6R0 609 aa9.63□□□□□ -0.87
DDX55-208ENST00000541259 MYO18AQ92614 2054 aaKnown RBP9.63□□□□□ -0.87
DDX55-208ENST00000541259 COL4A3Q01955 1670 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 IGLV3-10A0A075B6K4 115 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 ANHXE9PGG2 379 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 H3BRJ5 948 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 DAPK3O43293 454 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 TBL1XO60907 577 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 ECI2O75521 394 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 URI1O94763 535 aaPredicted RBP9.62□□□□□ -0.87
DDX55-208ENST00000541259 ARSAP15289 507 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 PRLRP16471 622 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 TCP1P17987 556 aaKnown RBP9.62□□□□□ -0.87
DDX55-208ENST00000541259 ERCC2P18074 760 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 EPHB2P29323 1055 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 HOXC13P31276 330 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 ARL4AP40617 200 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 HCAR3P49019 387 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 COPS2P61201 443 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 DYNLT1P63172 113 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 HTR4Q13639 388 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 PPP2R5EQ16537 467 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 TUSC1Q2TAM9 212 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 EML3Q32P44 896 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 C5orf22Q49AR2 442 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 TFDP3Q5H9I0 405 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 SEL1L2Q5TEA6 688 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 RHBDF2Q6PJF5 856 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 NPNTQ6UXI9 565 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 LRRC31Q6UY01 552 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 TPGS1Q6ZTW0 290 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 RFX8Q6ZV50 586 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 RFX6Q8HWS3 928 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 CREG2Q8IUH2 290 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 MAP7D3Q8IWC1 876 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 MFSD6LQ8IWD5 586 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 TP53INP2Q8IXH6 220 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 RASGEF1CQ8N431 466 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 CPXM2Q8N436 756 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 TDRD5Q8NAT2 981 aaKnown RBP9.62□□□□□ -0.87
DDX55-208ENST00000541259 KIF18AQ8NI77 898 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 OSCP1Q8WVF1 389 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 BHMTQ93088 406 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 RNF166Q96A37 237 aaPredicted RBP9.62□□□□□ -0.87
DDX55-208ENST00000541259 TBC1D31Q96DN5 1066 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 DDX50Q9BQ39 737 aaKnown RBP9.62□□□□□ -0.87
DDX55-208ENST00000541259 ZNF670Q9BS34 389 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 ARHGEF4Q9NR80 690 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 DUS2Q9NX74 493 aaKnown RBP9.62□□□□□ -0.87
DDX55-208ENST00000541259 OBP2AQ9NY56 170 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 PLK2Q9NYY3 685 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 STIM2Q9P246 746 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 TBC1D14Q9P2M4 693 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 SAE1Q9UBE0 346 aaPredicted RBP9.62□□□□□ -0.87
DDX55-208ENST00000541259 PPARGC1AQ9UBK2 798 aaKnown RBP9.62□□□□□ -0.87
DDX55-208ENST00000541259 CLEC4EQ9ULY5 219 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 NR2E1Q9Y466 385 aa9.62□□□□□ -0.87
DDX55-208ENST00000541259 KIAA1549LQ6ZVL6 1849 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 OTOL1A6NHN0 477 aaPredicted RBP9.61□□□□□ -0.87
DDX55-208ENST00000541259 PDE2AO00408 941 aaPredicted RBP9.61□□□□□ -0.87
DDX55-208ENST00000541259 DCLK1O15075 740 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 CST8O60676 142 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 FGGP02679 453 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 PSMC3P17980 439 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 PTPN7P35236 360 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 CHKAP35790 457 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 IFNAR2P48551 515 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 TNK2Q07912 1038 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 FCHO2Q0JRZ9 810 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 SLC10A2Q12908 348 aaPredicted RBP9.61□□□□□ -0.87
DDX55-208ENST00000541259 MTA1Q13330 715 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 AAK1Q2M2I8 961 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 PUS10Q3MIT2 529 aaKnown RBP9.61□□□□□ -0.87
DDX55-208ENST00000541259 DNTTIP2Q5QJE6 756 aaKnown RBP9.61□□□□□ -0.87
DDX55-208ENST00000541259 LY6G5CQ5SRR4 150 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 FYB2Q5VWT5 728 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 NCBP2-AS2Q69YL0 99 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 C1orf228Q6PIY5 440 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 MTSS1LQ765P7 747 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 TFAP2DQ7Z6R9 452 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 NLRP14Q86W24 1093 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 SLC13A5Q86YT5 568 aaPredicted RBP9.61□□□□□ -0.87
DDX55-208ENST00000541259 SPNS2Q8IVW8 549 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 CCDC33Q8N5R6 958 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 PLD5Q8N7P1 536 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 TTC8Q8TAM2 541 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 WFDC5Q8TCV5 224 aa9.61□□□□□ -0.87
DDX55-208ENST00000541259 DDI1Q8WTU0 396 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms