RNA–Protein interactions for RNA: ENST00000505226.1

UBE3D-206, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 3,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-206ENST00000505226 RTKNQ9BST9 563 aa12.18□□□□□ -0.46
UBE3D-206ENST00000505226 DPP3Q9NY33 737 aa12.18□□□□□ -0.46
UBE3D-206ENST00000505226 GGA3Q9NZ52 723 aa12.18□□□□□ -0.46
UBE3D-206ENST00000505226 GTF2IRD1Q9UHL9 959 aa12.18□□□□□ -0.46
UBE3D-206ENST00000505226 G3BP2Q9UN86 482 aaKnown RBP12.18□□□□□ -0.46
UBE3D-206ENST00000505226 A0A087WZ62 844 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 C19orf81C9J6K1 198 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 RNF103O00237 685 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 DENRO43583 198 aaKnown RBP12.17□□□□□ -0.46
UBE3D-206ENST00000505226 MLNP12872 115 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 XRCC1P18887 633 aaPredicted RBP12.17□□□□□ -0.46
UBE3D-206ENST00000505226 HMGB2P26583 209 aaKnown RBP12.17□□□□□ -0.46
UBE3D-206ENST00000505226 MAGEA12P43365 314 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 ATXN3P54252 364 aaPredicted RBP12.17□□□□□ -0.46
UBE3D-206ENST00000505226 TMEM132DQ14C87 1099 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 INSCQ1MX18 579 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 MAP3K21Q5TCX8 1036 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 FSTL4Q6MZW2 842 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 RBM44Q6ZP01 1051 aaKnown RBP12.17□□□□□ -0.46
UBE3D-206ENST00000505226 NME8Q8N427 588 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 MARVELD2Q8N4S9 558 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 RNF148Q8N7C7 305 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 CHST13Q8NET6 341 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 CDKL2Q92772 493 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 P2RY11Q96G91 374 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 MPP4Q96JB8 637 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 FDXACB1Q9BRP7 624 aaPredicted RBP12.17□□□□□ -0.46
UBE3D-206ENST00000505226 PSMD13Q9UNM6 376 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 A0A1B0GTW7 788 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 ZNF487B1APH4 448 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 STX16-NPEPL1H3BU86 382 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 CRTAMO95727 393 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 ARF4P18085 180 aaPredicted RBP12.17□□□□□ -0.46
UBE3D-206ENST00000505226 NUDT2P50583 147 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 IGBP1P78318 339 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 PITX1P78337 314 aaPredicted RBP12.17□□□□□ -0.46
UBE3D-206ENST00000505226 MRPS22P82650 360 aaKnown RBP12.17□□□□□ -0.46
UBE3D-206ENST00000505226 MYBPC1Q00872 1141 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 RPS6KL1Q9Y6S9 549 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 NEMP1O14524 444 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 PGK2P07205 417 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 MPSTP25325 297 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 PKNOX1P55347 436 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 CDKL1Q00532 357 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 NADK2Q4G0N4 442 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 SDCCAG8Q86SQ7 713 aaPredicted RBP12.17□□□□□ -0.46
UBE3D-206ENST00000505226 SNX32Q86XE0 403 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 CERS2Q96G23 380 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 SEPT10Q9P0V9 454 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 STK39Q9UEW8 545 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 RIMS3Q9UJD0 308 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 LZTS1Q9Y250 596 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 SNX9Q9Y5X1 595 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 AK5Q9Y6K8 562 aa12.17□□□□□ -0.46
UBE3D-206ENST00000505226 GAS2O43903 313 aaKnown RBP12.16□□□□□ -0.46
UBE3D-206ENST00000505226 ASLP04424 464 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 JUNP05412 331 aaKnown RBP12.16□□□□□ -0.46
UBE3D-206ENST00000505226 TGFB3P10600 412 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 P4HA1P13674 534 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 PIK3R1P27986 724 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 EPHA3P29320 983 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 GP5P40197 560 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 CEACAM7Q14002 265 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 ZNF423Q2M1K9 1284 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.16□□□□□ -0.46
UBE3D-206ENST00000505226 CELF3Q5SZQ8 465 aaKnown RBP12.16□□□□□ -0.46
UBE3D-206ENST00000505226 TMEM198Q66K66 360 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 SMYD5Q6GMV2 418 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 FAM131BQ86XD5 332 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 TICAM1Q8IUC6 712 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 DSELQ8IZU8 1212 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 ZNF567Q8N184 647 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 TDRD5Q8NAT2 981 aaKnown RBP12.16□□□□□ -0.46
UBE3D-206ENST00000505226 OR52K1Q8NGK4 314 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 FAM81AQ8TBF8 368 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 DGCR14Q96DF8 476 aaKnown RBP12.16□□□□□ -0.46
UBE3D-206ENST00000505226 CDRT15Q96T59 188 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 EPB41L1Q9H4G0 881 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 ASB7Q9H672 318 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 MAGED2Q9UNF1 606 aaPredicted RBP12.16□□□□□ -0.46
UBE3D-206ENST00000505226 SMIM31A0A1B0GVY4 71 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 HSPA4LO95757 839 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 LCP1P13796 627 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 PRDX6P30041 224 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 PTPN9P43378 593 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 LBX2Q6XYB7 198 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 PLPPR4Q7Z2D5 763 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 TMEM151AQ8N4L1 468 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 ZFP28Q8NHY6 868 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 CNKSR2Q8WXI2 1034 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 USP13Q92995 863 aaPredicted RBP12.16□□□□□ -0.46
UBE3D-206ENST00000505226 KCNK16Q96T55 309 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 GATA5Q9BWX5 397 aaPredicted RBP12.16□□□□□ -0.46
UBE3D-206ENST00000505226 RBM38Q9H0Z9 239 aaKnown RBP12.16□□□□□ -0.46
UBE3D-206ENST00000505226 TCF7L2Q9NQB0 619 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 APPL1Q9UKG1 709 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 KIAA1257Q9ULG3 409 aa12.16□□□□□ -0.46
UBE3D-206ENST00000505226 NOP56O00567 594 aaKnown RBP12.15□□□□□ -0.46
UBE3D-206ENST00000505226 C22orf31O95567 290 aa12.15□□□□□ -0.46
UBE3D-206ENST00000505226 SBK3P0C264 359 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms