RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 COPB1P53618 953 aaKnown RBP16.23■□□□□ 0.19
HDAC4-213ENST00000496347 POLR2FP61218 127 aaKnown RBP16.23■□□□□ 0.19
HDAC4-213ENST00000496347 GFPT1Q06210 699 aaPredicted RBP16.23■□□□□ 0.19
HDAC4-213ENST00000496347 NME3Q13232 169 aa16.23■□□□□ 0.19
HDAC4-213ENST00000496347 HNRNPA1L2Q32P51 320 aaKnown RBP16.23■□□□□ 0.19
HDAC4-213ENST00000496347 FSCBQ5H9T9 825 aa16.23■□□□□ 0.19
HDAC4-213ENST00000496347 ACBD5Q5T8D3 534 aaPredicted RBP16.23■□□□□ 0.19
HDAC4-213ENST00000496347 RNF219Q5W0B1 726 aaPredicted RBP16.23■□□□□ 0.19
HDAC4-213ENST00000496347 ZNF776Q68DI1 518 aaPredicted RBP16.23■□□□□ 0.19
HDAC4-213ENST00000496347 TRIM72Q6ZMU5 477 aa16.23■□□□□ 0.19
HDAC4-213ENST00000496347 SND1Q7KZF4 910 aaKnown RBP eCLIP16.23■□□□□ 0.19
HDAC4-213ENST00000496347 ARCQ7LC44 396 aa16.23■□□□□ 0.19
HDAC4-213ENST00000496347 XYLT1Q86Y38 959 aa16.23■□□□□ 0.19
HDAC4-213ENST00000496347 CCAR2Q8N163 923 aaKnown RBP16.23■□□□□ 0.19
HDAC4-213ENST00000496347 ZNF366Q8N895 744 aa16.23■□□□□ 0.19
HDAC4-213ENST00000496347 RPRD1AQ96P16 312 aaPredicted RBP16.23■□□□□ 0.19
HDAC4-213ENST00000496347 SPAG5Q96R06 1193 aa16.23■□□□□ 0.19
HDAC4-213ENST00000496347 NAT10Q9H0A0 1025 aaKnown RBP16.23■□□□□ 0.19
HDAC4-213ENST00000496347 RSPH9Q9H1X1 276 aaPredicted RBP16.23■□□□□ 0.19
HDAC4-213ENST00000496347 PIGVQ9NUD9 493 aa16.23■□□□□ 0.19
HDAC4-213ENST00000496347 SCML1Q9UN30 329 aa16.23■□□□□ 0.19
HDAC4-213ENST00000496347 EPHB6O15197 1021 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 GFPT2O94808 682 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 F9P00740 461 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 MMEP08473 750 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 CXCR3P49682 368 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 KLK7P49862 253 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 SULT1E1P49888 294 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 ECT2LQ008S8 904 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 CDR2Q01850 454 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 CENPCQ03188 943 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 TYRO3Q06418 890 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 SULT2A1Q06520 285 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 AUHQ13825 339 aaKnown RBP16.22■□□□□ 0.19
HDAC4-213ENST00000496347 SLC25A52Q3SY17 297 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 NAA35Q5VZE5 725 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 FBXL22Q6P050 247 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 MMS22LQ6ZRQ5 1243 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 DEFB119Q8N690 84 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 DNASE2BQ8WZ79 361 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 MRGPRX3Q96LB0 322 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 PPP1R9BQ96SB3 815 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 GPR174Q9BXC1 333 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 ARHGEF38Q9NXL2 777 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 ERVW-1Q9UQF0 538 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 HS3ST4Q9Y661 456 aa16.22■□□□□ 0.19
HDAC4-213ENST00000496347 MAP1BP46821 2468 aaKnown RBP16.21■□□□□ 0.19
HDAC4-213ENST00000496347 KNL1Q8NG31 2342 aa16.21■□□□□ 0.19
HDAC4-213ENST00000496347 EDDM13A0A1B0GTR0 161 aa16.21■□□□□ 0.19
HDAC4-213ENST00000496347 PAGE1O75459 146 aa16.21■□□□□ 0.19
HDAC4-213ENST00000496347 DNTTP04053 509 aa16.21■□□□□ 0.19
HDAC4-213ENST00000496347 SYPP08247 313 aa16.21■□□□□ 0.19
HDAC4-213ENST00000496347 STAT1P42224 750 aa16.21■□□□□ 0.19
HDAC4-213ENST00000496347 MAPK8P45983 427 aa16.21■□□□□ 0.19
HDAC4-213ENST00000496347 PLK1P53350 603 aa16.21■□□□□ 0.19
HDAC4-213ENST00000496347 ATXN3P54252 364 aaPredicted RBP16.21■□□□□ 0.19
HDAC4-213ENST00000496347 RPS14P62263 151 aaKnown RBP16.21■□□□□ 0.19
HDAC4-213ENST00000496347 NCAPHQ15003 741 aa16.21■□□□□ 0.19
HDAC4-213ENST00000496347 SYCP1Q15431 976 aa16.21■□□□□ 0.19
HDAC4-213ENST00000496347 C5orf22Q49AR2 442 aa16.21■□□□□ 0.19
HDAC4-213ENST00000496347 CXorf57Q6NSI4 855 aaKnown RBP16.21■□□□□ 0.19
HDAC4-213ENST00000496347 USP30Q70CQ3 517 aa16.21■□□□□ 0.19
HDAC4-213ENST00000496347 CIR1Q86X95 450 aaPredicted RBP16.21■□□□□ 0.19
HDAC4-213ENST00000496347 RGL4Q8IZJ4 473 aa16.21■□□□□ 0.19
HDAC4-213ENST00000496347 SLC20A1Q8WUM9 679 aa16.21■□□□□ 0.19
HDAC4-213ENST00000496347 ERGIC2Q96RQ1 377 aa16.21■□□□□ 0.19
HDAC4-213ENST00000496347 VANGL2Q9ULK5 521 aa16.21■□□□□ 0.19
HDAC4-213ENST00000496347 TARSL2A2RTX5 802 aaKnown RBP16.2■□□□□ 0.18
HDAC4-213ENST00000496347 LRRC10BA6NIK2 292 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 PCNX2A6NKB5 2137 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 RNASEH1O60930 286 aaKnown RBP16.2■□□□□ 0.18
HDAC4-213ENST00000496347 CLDN11O75508 207 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 KCNK5O95279 499 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 CYP1A1P04798 512 aaPredicted RBP16.2■□□□□ 0.18
HDAC4-213ENST00000496347 PDGFRAP16234 1089 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 CSRP1P21291 193 aaKnown RBP16.2■□□□□ 0.18
HDAC4-213ENST00000496347 KCNA4P22459 653 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 MMP8P22894 467 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 RDXP35241 583 aaKnown RBP16.2■□□□□ 0.18
HDAC4-213ENST00000496347 FLT3P36888 993 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 VASPP50552 380 aaPredicted RBP16.2■□□□□ 0.18
HDAC4-213ENST00000496347 NOVA1P51513 510 aaKnown RBP16.2■□□□□ 0.18
HDAC4-213ENST00000496347 FMO1Q01740 532 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 DEUP1Q05D60 604 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 SFSWAPQ12872 951 aaKnown RBP16.2■□□□□ 0.18
HDAC4-213ENST00000496347 ELAVL3Q14576 367 aaKnown RBP16.2■□□□□ 0.18
HDAC4-213ENST00000496347 NEK11Q8NG66 645 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 CPA5Q8WXQ8 436 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 BPIFA3Q9BQP9 254 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 ADAM33Q9BZ11 813 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 ZDHHC5Q9C0B5 715 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 TKTL2Q9H0I9 626 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 HSD3B7Q9H2F3 369 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 PABPC3Q9H361 631 aaKnown RBP16.2■□□□□ 0.18
HDAC4-213ENST00000496347 WDCPQ9H6R7 721 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 SGK2Q9HBY8 427 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 NLRC4Q9NPP4 1024 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 TMEM59LQ9UK28 342 aa16.2■□□□□ 0.18
HDAC4-213ENST00000496347 TP53BP1Q12888 1972 aaPredicted RBP16.19■□□□□ 0.18
HDAC4-213ENST00000496347 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms