RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 POLNQ7Z5Q5 900 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 PCYOX1LQ8NBM8 494 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 MECRQ9BV79 373 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 STARD7Q9NQZ5 370 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 MYRFQ9Y2G1 1151 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 C15orf38-AP3S2A0A0A6YYH1 394 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 ENDOD1O94919 500 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 ZNF143P52747 638 aaPredicted RBP16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 C21orf59P57076 290 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 ZC3H12AQ5D1E8 599 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 EMC10Q5UCC4 262 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 ARPINQ7Z6K5 226 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 STRA8Q7Z7C7 330 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 SNX32Q86XE0 403 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 PIWIL2Q8TC59 973 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 NAT14Q8WUY8 206 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 ADAM2Q99965 735 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 SNRNP25Q9BV90 132 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 UNKQ9C0B0 810 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 CHST12Q9NRB3 414 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 TAS2R1Q9NYW7 299 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 C16orf96A6NNT2 1141 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 RNF103O00237 685 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 ZBTB24O43167 697 aaPredicted RBP16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 SERPINE1P05121 402 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 RPL22P35268 128 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 CNPY1Q3B7I2 92 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 SEL1L3Q68CR1 1132 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 RINLQ6ZS11 566 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 STKLD1Q8NE28 680 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 NAT9Q9BTE0 207 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 EIF2AQ9BY44 585 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 ATXN3LQ9H3M9 355 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 GOLGA2P5Q9HBQ8 144 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 SAC3D1A6NKF1 404 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 GPR25O00155 361 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 AXLP30530 894 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 MAPK10P53779 464 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 LRRC38Q5VT99 294 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 ZDHHC17Q8IUH5 632 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 LPPQ93052 612 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 C18orf25Q96B23 403 aaPredicted RBP16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 CPXM1Q96SM3 734 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 GMLQ99445 158 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 B3GNT5Q9BYG0 378 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 SEMA6AQ9H2E6 1030 aa16.65■□□□□ 0.26
CCDC88B-209ENST00000494080 SLC12A8A0AV02 714 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 TMEM191CA6NGB0 347 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 H0Y626 953 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 TRIM16O95361 564 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 HSPA1AP0DMV8 641 aaKnown RBP16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 HSPA1BP0DMV9 641 aaKnown RBP16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 HOXD13P35453 343 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 NNMTP40261 264 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 POU6F1Q14863 301 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 PPP1R26Q5T8A7 1209 aaPredicted RBP16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 LINC00523Q86TU6 105 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 CPNE8Q86YQ8 564 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 NIFKQ9BYG3 293 aaKnown RBP16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 RBM22Q9NW64 420 aaKnown RBP eCLIP16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 NUP188Q5SRE5 1749 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 CAPN8A6NHC0 703 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 BTBD19C9JJ37 291 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 APOA1P02647 267 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 PTPN1P18031 435 aaKnown RBP16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 MGAT1P26572 445 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 ZBTB46Q86UZ6 589 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 COLEC11Q9BWP8 271 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 ACSS3Q9H6R3 686 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 LRRC42Q9Y546 428 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 WDR27A2RRH5 827 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 PRPF4O43172 522 aaKnown RBP eCLIP16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 NR1H2P55055 460 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 FASTKD3Q14CZ7 662 aaKnown RBP16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 ATP6V0D2Q8N8Y2 350 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 PIDD1Q9HB75 910 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 AK5Q9Y6K8 562 aa16.64■□□□□ 0.25
CCDC88B-209ENST00000494080 hCG_1818297A0A087WSY0 165 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 GOLGA8TH3BQL2 631 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 ASMTLO95671 621 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 ALBP02768 609 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 SLC2A3P11169 496 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 VCLP18206 1134 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 INPP1P49441 399 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 NANOGNBQ7Z5D8 188 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 TSPAN14Q8NG11 270 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 TMEM169Q96HH4 297 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 APOBEC3GQ9HC16 384 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 STXBP5LQ9Y2K9 1186 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 SLC30A1Q9Y6M5 507 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 DOT1LQ8TEK3 1739 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 ALOX15BO15296 676 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 ME2P23368 584 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 CRADDP78560 199 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 RAD51Q06609 339 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 IMPG1Q17R60 797 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 GANCQ8TET4 914 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 ZC3H15Q8WU90 426 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 DACH2Q96NX9 599 aa16.63■□□□□ 0.25
CCDC88B-209ENST00000494080 NTPCRQ9BSD7 190 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms