RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 GGA2Q9UJY4 613 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 TFR2Q9UP52 801 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 AP4E1Q9UPM8 1137 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 TBC1D30Q9Y2I9 924 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 CUL9Q8IWT3 2517 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 RCCD1A6NED2 376 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 CHURC1-FNTBB4DL54 471 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 ARHGAP6O43182 974 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 CREB3O43889 395 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 CHRM1P11229 460 aaPredicted RBP12.3□□□□□ -0.44
VPS13D-204ENST00000469054 TCF4P15884 667 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 RHOQP17081 205 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 MAN1A1P33908 653 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 VAV2P52735 878 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 HADHBP55084 474 aaKnown RBP12.3□□□□□ -0.44
VPS13D-204ENST00000469054 OXCT1P55809 520 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 SLC25A11Q02978 314 aaKnown RBP12.3□□□□□ -0.44
VPS13D-204ENST00000469054 SEMA3BQ13214 749 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 MESDQ14696 234 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 EIF4HQ15056 248 aaKnown RBP12.3□□□□□ -0.44
VPS13D-204ENST00000469054 CA9Q16790 459 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 HADHQ16836 314 aaKnown RBP12.3□□□□□ -0.44
VPS13D-204ENST00000469054 HSF5Q4G112 596 aaPredicted RBP12.3□□□□□ -0.44
VPS13D-204ENST00000469054 C2orf27AQ580R0 203 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 KCNT1Q5JUK3 1230 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 TMEM215Q68D42 235 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 TXNRD3NBQ6F5E7 133 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 CXorf57Q6NSI4 855 aaKnown RBP12.3□□□□□ -0.44
VPS13D-204ENST00000469054 RWDD4Q6NW29 188 aaKnown RBP12.3□□□□□ -0.44
VPS13D-204ENST00000469054 PKN3Q6P5Z2 889 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 KIAA1328Q86T90 577 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 SETD3Q86TU7 594 aaPredicted RBP12.3□□□□□ -0.44
VPS13D-204ENST00000469054 ADIPOR2Q86V24 386 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 SPEM1Q8N4L4 309 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 ZNF513Q8N8E2 541 aaPredicted RBP12.3□□□□□ -0.44
VPS13D-204ENST00000469054 UCMAQ8WVF2 138 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 TBC1D31Q96DN5 1066 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 DHX35Q9H5Z1 703 aaKnown RBP12.3□□□□□ -0.44
VPS13D-204ENST00000469054 RETREG1Q9H6L5 497 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 SPATA6Q9NWH7 488 aaPredicted RBP12.3□□□□□ -0.44
VPS13D-204ENST00000469054 ELOVL2Q9NXB9 296 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 HCN2Q9UL51 889 aa12.3□□□□□ -0.44
VPS13D-204ENST00000469054 TMEM110-MUSTN1A8MSY1 372 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 BTNL10A8MVZ5 291 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 PJA2O43164 708 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 MOCS3O95396 460 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 RARAP10276 462 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 HNRNPLP14866 589 aaKnown RBP eCLIP12.29□□□□□ -0.44
VPS13D-204ENST00000469054 EPHB2P29323 1055 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 HOXC13P31276 330 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 HTR7P34969 479 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 CSKP41240 450 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 SLC1A1P43005 524 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 SSR1P43307 286 aaKnown RBP12.29□□□□□ -0.44
VPS13D-204ENST00000469054 CXCL12P48061 93 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 CCR3P51677 355 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 SLC12A1Q13621 1099 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 DMC1Q14565 340 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 SMTNL2Q2TAL5 461 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 PLEKHG6Q3KR16 790 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 FUT11Q495W5 492 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 PITRM1Q5JRX3 1037 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 C6orf118Q5T5N4 469 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 EGFLAMQ63HQ2 1017 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 MBLAC2Q68D91 279 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 TRMT11Q7Z4G4 463 aaKnown RBP12.29□□□□□ -0.44
VPS13D-204ENST00000469054 TFAP2DQ7Z6R9 452 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 NLRP14Q86W24 1093 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 CPNE8Q86YQ8 564 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 C1orf210Q8IVY1 113 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 TXLNBQ8N3L3 684 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 ALLCQ8N6M5 410 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 IL17RCQ8NAC3 791 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 TXNDC5Q8NBS9 432 aaKnown RBP12.29□□□□□ -0.44
VPS13D-204ENST00000469054 TEKT4Q8WW24 435 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 ACDQ96AP0 544 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 CALR3Q96L12 384 aaKnown RBP12.29□□□□□ -0.44
VPS13D-204ENST00000469054 PPP1R9BQ96SB3 815 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 DESI2Q9BSY9 194 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 CIPCQ9C0C6 399 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 LACRTQ9GZZ8 138 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 ZWILCHQ9H900 591 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 TMEM248Q9NWD8 314 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 ZNF212Q9UDV6 495 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 INTS6Q9UL03 887 aaKnown RBP12.29□□□□□ -0.44
VPS13D-204ENST00000469054 NEU3Q9UQ49 428 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 MYOFQ9NZM1 2061 aa12.29□□□□□ -0.44
VPS13D-204ENST00000469054 ZDBF2Q9HCK1 2354 aa12.28□□□□□ -0.44
VPS13D-204ENST00000469054 EEF2KO00418 725 aaKnown RBP12.28□□□□□ -0.44
VPS13D-204ENST00000469054 NPC1O15118 1278 aa12.28□□□□□ -0.44
VPS13D-204ENST00000469054 LAMTOR5O43504 91 aa12.28□□□□□ -0.44
VPS13D-204ENST00000469054 NRDCO43847 1150 aa12.28□□□□□ -0.44
VPS13D-204ENST00000469054 KLF8O95600 359 aaPredicted RBP12.28□□□□□ -0.44
VPS13D-204ENST00000469054 ATP5BP06576 529 aaKnown RBP12.28□□□□□ -0.44
VPS13D-204ENST00000469054 RHOCP08134 193 aa12.28□□□□□ -0.44
VPS13D-204ENST00000469054 POLR2EP19388 210 aaKnown RBP12.28□□□□□ -0.44
VPS13D-204ENST00000469054 MZF1P28698 734 aaPredicted RBP12.28□□□□□ -0.44
VPS13D-204ENST00000469054 OR1E1P30953 314 aa12.28□□□□□ -0.44
VPS13D-204ENST00000469054 ZNF135P52742 658 aaPredicted RBP12.28□□□□□ -0.44
VPS13D-204ENST00000469054 PLK1P53350 603 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms