RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 RCOR1Q9UKL0 485 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 PCDHA7Q9UN72 937 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 PTPRFP10586 1907 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 BAZ2BQ9UIF8 2168 aaKnown RBP4.21□□□□□ -1.73
HMGB3P20-201ENST00000417997 ASTN2O75129 1339 aaPredicted RBP4.21□□□□□ -1.73
HMGB3P20-201ENST00000417997 A0A0G2JMZ2 1700 aa4.21□□□□□ -1.73
HMGB3P20-201ENST00000417997 LOXHD1Q8IVV2 1947 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 A0A1B0GVL5 298 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 ESYT2A0FGR8 921 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 ANKRD62A6NC57 917 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 TMEM232C9JQI7 657 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 F5H6K3 240 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 ZBTB5O15062 677 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 CTAGE5O15320 804 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 UNC5CO95185 931 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 CCDC192P0DO97 292 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 PFKFB1P16118 471 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 VCAM1P19320 739 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 NF2P35240 595 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 SLC16A2P36021 539 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 SYKP43405 635 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 TRAPPC10P48553 1259 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 TOB1P50616 345 aaPredicted RBP4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 CLCN2P51788 898 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 PRELPP51888 382 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 NEK2P51955 445 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 STAT2P52630 851 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 ZNF134P52741 427 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 SOX8P57073 446 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 KLRC3Q07444 240 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 FOXF2Q12947 444 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 SLC39A14Q15043 492 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 CAMK4Q16566 473 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 QRICH1Q2TAL8 776 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 LONRF3Q496Y0 759 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 FAM83BQ5T0W9 1011 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 TEDDM1Q5T9Z0 273 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 ARHGAP40Q5TG30 622 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 SASS6Q6UVJ0 657 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 FAM160B2Q86V87 743 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 SCYL3Q8IZE3 742 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 ADGRF4Q8IZF3 695 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 SPICE1Q8N0Z3 855 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 DCPSQ96C86 337 aaKnown RBP4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 CDK5RAP3Q96JB5 506 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 NUP88Q99567 741 aaPredicted RBP4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 ZMYND12Q9H0C1 365 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 GLT8D2Q9H1C3 349 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 DEFB129Q9H1M3 183 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 VCPKMTQ9H867 229 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 JMJD4Q9H9V9 463 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 SERHLQ9NQF3 203 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 HESX1Q9UBX0 185 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 SERTAD3Q9UJW9 196 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 SCAF8Q9UPN6 1271 aaKnown RBP4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 TMX2Q9Y320 296 aa4.21□□□□□ -1.74
HMGB3P20-201ENST00000417997 SSC5DA1L4H1 1573 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 A0A1W2PRG0 241 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 VWA3AA6NCI4 1184 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 DNAJC9-AS1A6NH13 148 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 QSOX1O00391 747 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 WDR46O15213 610 aaKnown RBP4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 MARCH6O60337 910 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 NEMFO60524 1076 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 CTNND1O60716 968 aaKnown RBP4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 OFD1O75665 1012 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 DDNO94850 711 aaPredicted RBP4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 PRKCGP05129 697 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 GRPP07492 148 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 FAM163BP0C2L3 166 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 OR52Z1P0C646 297 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 ATXN1LP0C7T5 689 aaKnown RBP4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 CMA1P23946 247 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 AKAP5P24588 427 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 EPS15P42566 896 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 PXNP49023 591 aaPredicted RBP4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 NDUFA8P51970 172 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 MRPL12P52815 198 aaKnown RBP4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 LILRA4P59901 499 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 GRM1Q13255 1194 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 ORC2Q13416 577 aaPredicted RBP4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 IQCB1Q15051 598 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 STX1AQ16623 288 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 UBE2SQ16763 222 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 TMEM266Q2M3C6 531 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 SLC35G1Q2M3R5 365 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 LETM2Q2VYF4 491 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 SUPT20HL1Q3ZLR7 823 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 USH1GQ495M9 461 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 EARS2Q5JPH6 523 aaKnown RBP4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 ZNF618Q5T7W0 954 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 JAKMIP3Q5VZ66 844 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 RESP18Q5W5W9 173 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 ICE2Q659A1 982 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 CCDC174Q6PII3 467 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 SLC29A4Q7RTT9 530 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 NEK8Q86SG6 692 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 CEP57L1Q8IYX8 460 aa4.2□□□□□ -1.74
HMGB3P20-201ENST00000417997 CELF5Q8N6W0 485 aaKnown RBP4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms