RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 FANCCQ00597 558 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 APBA1Q02410 837 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 KLHL30Q0D2K2 578 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 SCAPQ12770 1279 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 PTP4A2Q12974 167 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 NME3Q13232 169 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 SLC14A1Q13336 389 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 HNRNPDQ14103 355 aaKnown RBP6.59□□□□□ -1.35
USP54-202ENST00000413442 TAF5Q15542 800 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 DUOXA1Q1HG43 343 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 HNRNPA1L2Q32P51 320 aaKnown RBP6.59□□□□□ -1.35
USP54-202ENST00000413442 MAP7D1Q3KQU3 841 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 PLEKHG6Q3KR16 790 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 TTC31Q49AM3 519 aaPredicted RBP6.59□□□□□ -1.35
USP54-202ENST00000413442 FAM46CQ5VWP2 391 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 NAA35Q5VZE5 725 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 EGFLAMQ63HQ2 1017 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 NADSYN1Q6IA69 706 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 RETSATQ6NUM9 610 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 FBXL22Q6P050 247 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 SLC23A3Q6PIS1 610 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 CHSY1Q86X52 802 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 PASD1Q8IV76 773 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 CCAR2Q8N163 923 aaKnown RBP6.59□□□□□ -1.35
USP54-202ENST00000413442 CARNMT1Q8N4J0 409 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 C12orf50Q8NA57 414 aaPredicted RBP6.59□□□□□ -1.35
USP54-202ENST00000413442 FAM174AQ8TBP5 190 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 HMGB4Q8WW32 186 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 CASKIN2Q8WXE0 1202 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 DNASE2BQ8WZ79 361 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 BAP1Q92560 729 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 SKA1Q96BD8 255 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 LRIG1Q96JA1 1093 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 RPRD1AQ96P16 312 aaPredicted RBP6.59□□□□□ -1.35
USP54-202ENST00000413442 HHIPQ96QV1 700 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 FEM1AQ9BSK4 669 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 CNPY3Q9BT09 278 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 ZYG11BQ9C0D3 744 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 TKTL2Q9H0I9 626 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 ISCUQ9H1K1 167 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 RSPH9Q9H1X1 276 aaPredicted RBP6.59□□□□□ -1.35
USP54-202ENST00000413442 SGK2Q9HBY8 427 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 CBX8Q9HC52 389 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 ABCB8Q9NUT2 735 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 DLL3Q9NYJ7 618 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 WSB2Q9NYS7 404 aaPredicted RBP6.59□□□□□ -1.35
USP54-202ENST00000413442 STIM2Q9P246 746 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 USP36Q9P275 1121 aaKnown RBP6.59□□□□□ -1.35
USP54-202ENST00000413442 SLC25A13Q9UJS0 675 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 AJAP1Q9UKB5 411 aaPredicted RBP6.59□□□□□ -1.35
USP54-202ENST00000413442 FZD4Q9ULV1 537 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 CAPN11Q9UMQ6 739 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 ERVW-1Q9UQF0 538 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 SCINQ9Y6U3 715 aa6.59□□□□□ -1.35
USP54-202ENST00000413442 PIEZO1Q92508 2521 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 METTL12A8MUP2 240 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 UPK3BL1B0FP48 263 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 UPK3BL2E5RIL1 263 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 MCF2LO15068 1137 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 SLC7A4O43246 635 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 TEX33O43247 280 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 ATP9BO43861 1147 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 ADH1BP00325 375 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 SERPING1P05155 500 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 SERPINF2P08697 491 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 RHOQP17081 205 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 GPD1P21695 349 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 C5AR1P21730 350 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 L1CAMP32004 1257 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 IL12RB1P42701 662 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 HCAR3P49019 387 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 MAPKAPK2P49137 400 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 RPS24P62847 133 aaKnown RBP6.58□□□□□ -1.36
USP54-202ENST00000413442 ZNF33AQ06730 810 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 PIGHQ14442 188 aaPredicted RBP6.58□□□□□ -1.36
USP54-202ENST00000413442 ELAVL3Q14576 367 aaKnown RBP6.58□□□□□ -1.36
USP54-202ENST00000413442 ASIC2Q16515 512 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 ZSCAN23Q3MJ62 389 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 FUT11Q495W5 492 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 FNDC3BQ53EP0 1204 aaKnown RBP6.58□□□□□ -1.36
USP54-202ENST00000413442 BOLA3Q53S33 107 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 INO80DQ53TQ3 878 aaPredicted RBP6.58□□□□□ -1.36
USP54-202ENST00000413442 PITRM1Q5JRX3 1037 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 TAF3Q5VWG9 929 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 DAB2IPQ5VWQ8 1189 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 RAP1GAP2Q684P5 730 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 TMEM215Q68D42 235 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 ZNF776Q68DI1 518 aaPredicted RBP6.58□□□□□ -1.36
USP54-202ENST00000413442 NAIF1Q69YI7 327 aaPredicted RBP6.58□□□□□ -1.36
USP54-202ENST00000413442 PLEKHA7Q6IQ23 1121 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 NEK5Q6P3R8 708 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 RFWD3Q6PCD5 774 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 DCUN1D2Q6PH85 259 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 IL27RAQ6UWB1 636 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 PRR23CQ6ZRP0 262 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 MON1BQ7L1V2 547 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 SLFN11Q7Z7L1 901 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 MCOLN2Q8IZK6 566 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 UBE2Q2Q8WVN8 375 aa6.58□□□□□ -1.36
USP54-202ENST00000413442 RXFP2Q8WXD0 754 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms