RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 Q8TCH9 128 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 SEPT1Q8WYJ6 367 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 GLG1Q92896 1179 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 NMD3Q96D46 503 aaKnown RBP6.99□□□□□ -1.29
USP40-202ENST00000409945 NAP1L4Q99733 375 aaKnown RBP6.99□□□□□ -1.29
USP40-202ENST00000409945 MXRA8Q9BRK3 442 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 VPS11Q9H270 941 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 FAM30AQ9NZY2 134 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 TBX21Q9UL17 535 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 KIF3AQ9Y496 699 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 A0A087WZ62 844 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 C17orf102A2RUQ5 167 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 PATE3B3GLJ2 98 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 PFKFB2O60825 505 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 CD4P01730 458 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 PPM1AP35813 382 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 MC2RQ01718 297 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 SP4Q02446 784 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 TRIM14Q14142 442 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 HABP2Q14520 560 aaPredicted RBP6.98□□□□□ -1.29
USP40-202ENST00000409945 FAM160B1Q5W0V3 765 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 UNC13DQ70J99 1090 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 MPP5Q8N3R9 675 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 ZSCAN31Q96LW9 406 aaPredicted RBP6.98□□□□□ -1.29
USP40-202ENST00000409945 RBM15Q96T37 977 aaKnown RBP eCLIP6.98□□□□□ -1.29
USP40-202ENST00000409945 TRPV6Q9H1D0 765 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 SMARCAD1Q9H4L7 1026 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 ZCCHC4Q9H5U6 513 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 TBC1D22BQ9NU19 505 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 CFAP97Q9P2B7 532 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 SLC9A2Q9UBY0 812 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 UBIAD1Q9Y5Z9 338 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 TRIOBPQ9H2D6 2365 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 MYH7BA7E2Y1 1941 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 STK36Q9NRP7 1315 aa6.98□□□□□ -1.29
USP40-202ENST00000409945 A0A087WWL8 130 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 DCLK1O15075 740 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 NBNO60934 754 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 FGBP02675 491 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 LGALS2P05162 132 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 GRPP07492 148 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 ZNF286BP0CG31 522 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 FDXRP22570 491 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 NHLH2Q02577 135 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 HSDL1Q3SXM5 330 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 TMEM63BQ5T3F8 832 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 ZNF783Q6ZMS7 281 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 PLA2G4DQ86XP0 818 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 PDSS2Q86YH6 399 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 FAM46DQ8NEK8 389 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 ZFP28Q8NHY6 868 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 AFAP1L1Q8TED9 768 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 ZNF483Q8TF39 744 aaPredicted RBP6.97□□□□□ -1.29
USP40-202ENST00000409945 NAP1L5Q96NT1 182 aaPredicted RBP6.97□□□□□ -1.29
USP40-202ENST00000409945 UNKQ9C0B0 810 aaKnown RBP6.97□□□□□ -1.29
USP40-202ENST00000409945 FTOQ9C0B1 505 aaKnown RBP eCLIP6.97□□□□□ -1.29
USP40-202ENST00000409945 WDR12Q9GZL7 423 aaKnown RBP6.97□□□□□ -1.29
USP40-202ENST00000409945 PRO3102Q9H379 93 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 PNPLA8Q9NP80 782 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 TRMT13Q9NUP7 481 aaKnown RBP6.97□□□□□ -1.29
USP40-202ENST00000409945 ERAP1Q9NZ08 941 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 VPS54Q9P1Q0 977 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 NFASCO94856 1347 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 F5H423 210 aaPredicted RBP6.97□□□□□ -1.29
USP40-202ENST00000409945 FGF18O76093 207 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 ELANEP08246 267 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 CYP3A4P08684 503 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 CYP2C18P33260 490 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 TCF7P36402 384 aaPredicted RBP6.97□□□□□ -1.29
USP40-202ENST00000409945 SLC26A2P50443 739 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 BECN1Q14457 450 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 DHX8Q14562 1220 aaKnown RBP6.97□□□□□ -1.29
USP40-202ENST00000409945 UBXN11Q5T124 520 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 MIS18BP1Q6P0N0 1132 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 DRICH1Q6PGQ1 229 aaPredicted RBP6.97□□□□□ -1.29
USP40-202ENST00000409945 ZNF280BQ86YH2 543 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 BLIDQ8IZY5 108 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 ATP6V0A1Q93050 837 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 GPR20Q99678 358 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 ZNF577Q9BSK1 485 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 PARD6AQ9NPB6 346 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 ORC3Q9UBD5 711 aaPredicted RBP6.97□□□□□ -1.29
USP40-202ENST00000409945 EMSYQ7Z589 1322 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 NRCAMQ92823 1304 aa6.97□□□□□ -1.29
USP40-202ENST00000409945 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.96□□□□□ -1.3
USP40-202ENST00000409945 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.96□□□□□ -1.3
USP40-202ENST00000409945 RRN3P2A6NIE6 340 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 M0QZ92 97 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 IPO5O00410 1097 aaKnown RBP6.96□□□□□ -1.3
USP40-202ENST00000409945 APOL1O14791 398 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 CYP2C9P11712 490 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 CSF2RAP15509 400 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 KCNA2P16389 499 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 CCL23P55773 120 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 FAM189BP81408 668 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 HMGN5P82970 282 aaKnown RBP6.96□□□□□ -1.3
USP40-202ENST00000409945 SP2Q02086 613 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 NONOQ15233 471 aaKnown RBP eCLIP6.96□□□□□ -1.3
USP40-202ENST00000409945 RABEP1Q15276 862 aa6.96□□□□□ -1.3
USP40-202ENST00000409945 GRAMD1BQ3KR37 738 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms