RNA–Protein interactions for RNA: ENST00000396548.5

TRIM39-204, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TRIM39, Length 3,198 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-204ENST00000396548 FAM217AQ8IXS0 508 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 LRRC45Q96CN5 670 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 PWWP2AQ96N64 755 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 GORASP1Q9BQQ3 440 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 ZYG11BQ9C0D3 744 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 NFS1Q9Y697 457 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.07□□□□□ -0.32
TRIM39-204ENST00000396548 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.07□□□□□ -0.32
TRIM39-204ENST00000396548 PPP1R12AO14974 1030 aaPredicted RBP13.07□□□□□ -0.32
TRIM39-204ENST00000396548 CCL16O15467 120 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 TACR2P21452 398 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 GABRR2P28476 465 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 SERPINB6P35237 376 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 HSD17B3P37058 310 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 SLC7A9P82251 487 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 TAF12Q16514 161 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 TXNDC8Q6A555 127 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 RWDD4Q6NW29 188 aaKnown RBP13.07□□□□□ -0.32
TRIM39-204ENST00000396548 PDZD4Q76G19 769 aaPredicted RBP13.07□□□□□ -0.32
TRIM39-204ENST00000396548 PCGF5Q86SE9 256 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 LZTR1Q8N653 840 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 SLC39A8Q9C0K1 460 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 NKX2-4Q9H2Z4 354 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 HCFC1R1Q9NWW0 138 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 PAK5Q9P286 719 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 DNMT3BQ9UBC3 853 aaKnown RBP13.07□□□□□ -0.32
TRIM39-204ENST00000396548 AGO1Q9UL18 857 aaKnown RBP13.07□□□□□ -0.32
TRIM39-204ENST00000396548 SHOC2Q9UQ13 582 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 SHROOM3Q8TF72 1996 aa13.07□□□□□ -0.32
TRIM39-204ENST00000396548 RFPL2O75678 378 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 METTL18O95568 372 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 PFKLP17858 780 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 BMP8BP34820 402 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 PPM1LQ5SGD2 360 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 C4orf22Q6V702 233 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 PPIL6Q8IXY8 311 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 PRICKLE1Q96MT3 831 aaPredicted RBP13.06□□□□□ -0.32
TRIM39-204ENST00000396548 RETREG1Q9H6L5 497 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 DOCK6Q96HP0 2047 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 MAFKO60675 156 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 LATS1O95835 1130 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 TNNT3P45378 269 aaPredicted RBP13.06□□□□□ -0.32
TRIM39-204ENST00000396548 CYP4F8P98187 520 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 GAD2Q05329 585 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 DHX9Q08211 1270 aaKnown RBP13.06□□□□□ -0.32
TRIM39-204ENST00000396548 PRSS36Q5K4E3 855 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 HEATR6Q6AI08 1181 aaKnown RBP13.06□□□□□ -0.32
TRIM39-204ENST00000396548 POTEHQ6S545 545 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 ARHGAP36Q6ZRI8 547 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 CCDC110Q8TBZ0 833 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 FATE1Q969F0 183 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 ZNF707Q96C28 371 aaPredicted RBP13.06□□□□□ -0.32
TRIM39-204ENST00000396548 ZNF419Q96HQ0 510 aaPredicted RBP13.06□□□□□ -0.32
TRIM39-204ENST00000396548 FOXP3Q9BZS1 431 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 C2orf16Q68DN1 1984 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 A0A0A0MRY4 1105 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.06□□□□□ -0.32
TRIM39-204ENST00000396548 ZNF189O75820 626 aaPredicted RBP13.06□□□□□ -0.32
TRIM39-204ENST00000396548 TMEM63AO94886 807 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 PEX11BO96011 259 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 HNRNPA1P09651 372 aaKnown RBP eCLIP13.06□□□□□ -0.32
TRIM39-204ENST00000396548 CORO1AP31146 461 aaKnown RBP13.06□□□□□ -0.32
TRIM39-204ENST00000396548 NDST2P52849 883 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 ANKRD20A2Q5SQ80 823 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 ANKRD20A1Q5TYW2 823 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 ANKRD20A3Q5VUR7 823 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 MTERF4Q7Z6M4 381 aaKnown RBP13.06□□□□□ -0.32
TRIM39-204ENST00000396548 KLHDC8BQ8IXV7 354 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 ARL14EPQ8N8R7 260 aaPredicted RBP13.06□□□□□ -0.32
TRIM39-204ENST00000396548 SHKBP1Q8TBC3 707 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 SPATA13Q96N96 652 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 PHACTR1Q9C0D0 580 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 LMAN2LQ9H0V9 348 aa13.06□□□□□ -0.32
TRIM39-204ENST00000396548 MTRF1LQ9UGC7 380 aaKnown RBP13.06□□□□□ -0.32
TRIM39-204ENST00000396548 CHADO15335 359 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 CSPG5O95196 566 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 MX2P20592 715 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 CCNCP24863 283 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 PTPN3P26045 913 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 CDC25CP30307 473 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 AP1B1Q10567 949 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 STXBP5Q5T5C0 1151 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 ZNF567Q8N184 647 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 MICAL1Q8TDZ2 1067 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 CELF6Q96J87 481 aaKnown RBP13.05□□□□□ -0.32
TRIM39-204ENST00000396548 NUP210Q8TEM1 1887 aaPredicted RBP13.05□□□□□ -0.32
TRIM39-204ENST00000396548 RNF103O00237 685 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 NDC80O14777 642 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 PER2O15055 1255 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 LPXNO60711 386 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 HARS2P49590 506 aaKnown RBP13.05□□□□□ -0.32
TRIM39-204ENST00000396548 SGSHP51688 502 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 PMS2P54278 862 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 SEMA5AQ13591 1074 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 DUSP6Q16828 381 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 DENND1CQ8IV53 801 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 VN1R2Q8NFZ6 395 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 CORO1BQ9BR76 489 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 SLC46A2Q9BY10 475 aa13.05□□□□□ -0.32
TRIM39-204ENST00000396548 ETNK1Q9HBU6 452 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms