RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 ZNF33AQ06730 810 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 HJURPQ8NCD3 748 aaPredicted RBP8.32□□□□□ -1.08
LIMS1-203ENST00000393310 TRIM45Q9H8W5 580 aaPredicted RBP8.32□□□□□ -1.08
LIMS1-203ENST00000393310 TLK1Q9UKI8 766 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 AP1M2Q9Y6Q5 423 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 SMIM23A6NLE4 172 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 DHX15O43143 795 aaKnown RBP8.32□□□□□ -1.08
LIMS1-203ENST00000393310 ACSL4O60488 711 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 FAM163BP0C2L3 166 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 CCDC166P0CW27 439 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 TROAPQ12815 778 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 FSCBQ5H9T9 825 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 TMEM53Q6P2H8 277 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 SYCE2Q6PIF2 218 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 PACS1Q6VY07 963 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 NRSN1Q8IZ57 195 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 SUN3Q8TAQ9 357 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 MYCBPAPQ8TBZ2 947 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 MAML1Q92585 1016 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 CNPY3Q9BT09 278 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 DDX56Q9NY93 547 aaKnown RBP8.32□□□□□ -1.08
LIMS1-203ENST00000393310 MYO1AQ9UBC5 1043 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 KIAA1257Q9ULG3 409 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 ADAMTSL1Q8N6G6 1762 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 CACNA1BQ00975 2339 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 SPTLC2O15270 562 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 KAT7O95251 611 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 RPA1P27694 616 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 IFNA8P32881 189 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 HNRNPKP61978 463 aaKnown RBP eCLIP8.32□□□□□ -1.08
LIMS1-203ENST00000393310 TARBP2Q15633 366 aaKnown RBP8.32□□□□□ -1.08
LIMS1-203ENST00000393310 CCDC81Q6ZN84 652 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 DAGLBQ8NCG7 672 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 CFAP61Q8NHU2 1237 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 IL31RAQ8NI17 732 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 HPDLQ96IR7 371 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 MSLNLQ96KJ4 702 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 ZNF334Q9HCZ1 680 aaPredicted RBP8.32□□□□□ -1.08
LIMS1-203ENST00000393310 CYP8B1Q9UNU6 501 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 TAF1P21675 1872 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 KDM3BQ7LBC6 1761 aa8.32□□□□□ -1.08
LIMS1-203ENST00000393310 NOTOA8MTQ0 251 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 BOLA2-SMG1P6H3BVE0 249 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 RTCAO00442 366 aaKnown RBP8.31□□□□□ -1.08
LIMS1-203ENST00000393310 ANGPT2O15123 496 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 CLIC2O15247 247 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 BPNT1O95861 308 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 RECKO95980 971 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 ALPPP05187 535 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 ALPIP09923 528 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 EIF2DP41214 584 aaKnown RBP8.31□□□□□ -1.08
LIMS1-203ENST00000393310 ACAP2Q15057 778 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 DCAF6Q58WW2 860 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 TTC23LQ6PF05 361 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 RFX8Q6ZV50 586 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 ASCL5Q7RTU5 278 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 ADGRD2Q7Z7M1 963 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 NUP93Q8N1F7 819 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 UTP15Q8TED0 518 aaKnown RBP8.31□□□□□ -1.08
LIMS1-203ENST00000393310 GAL3ST1Q99999 423 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 ZFATQ9P243 1243 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 KPNA7A9QM74 516 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 TMEM189-UBE2V1I3L0A0 370 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 FBXO21O94952 628 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 FGRP09769 529 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 GHRHRQ02643 423 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 CSTF3Q12996 717 aaKnown RBP8.31□□□□□ -1.08
LIMS1-203ENST00000393310 ARL6IP4Q66PJ3 421 aaKnown RBP8.31□□□□□ -1.08
LIMS1-203ENST00000393310 RPLP0P6Q8NHW5 317 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 INPP5DQ92835 1189 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.31□□□□□ -1.08
LIMS1-203ENST00000393310 FERD3LQ96RJ6 166 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 MFRPQ9BY79 579 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 SLC2A11Q9BYW1 496 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 MUC3BQ9H195 1237 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 PIF1Q9H611 641 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 FAM204AQ9H8W3 233 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 ABI3Q9P2A4 366 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 STON1Q9Y6Q2 735 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 BRCA1P38398 1863 aaKnown RBP8.31□□□□□ -1.08
LIMS1-203ENST00000393310 AKR1B15C9JRZ8 316 aaPredicted RBP8.31□□□□□ -1.08
LIMS1-203ENST00000393310 TNFSF14O43557 240 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 FESP07332 822 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 ITGB5P18084 799 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 TBXAS1P24557 533 aaPredicted RBP8.31□□□□□ -1.08
LIMS1-203ENST00000393310 CD6P30203 668 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 KRT9P35527 623 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 AFF3P51826 1226 aaKnown RBP8.31□□□□□ -1.08
LIMS1-203ENST00000393310 KRT85P78386 507 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 UGP2Q16851 508 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 CPLX4Q7Z7G2 160 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 NPAS3Q8IXF0 933 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 SYCE1Q8N0S2 351 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 LRRC52Q8N7C0 313 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 MAPK15Q8TD08 544 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 OVCA2Q8WZ82 227 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 LARP4BQ92615 738 aaKnown RBP8.31□□□□□ -1.08
LIMS1-203ENST00000393310 MED15Q96RN5 788 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 SPON2Q9BUD6 331 aa8.31□□□□□ -1.08
LIMS1-203ENST00000393310 TPSD1Q9BZJ3 242 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms